RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ATF2P15336 505 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 TNNI1P19237 187 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 POLR2BP30876 1174 aaKnown RBP7.21□□□□□ -1.26
VPS52-219ENST00000493379 NRIP1P48552 1158 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 FANCCQ00597 558 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 GPR17Q13304 367 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 PSMD5Q16401 504 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 SOWAHAQ2M3V2 549 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 SGSM1Q2NKQ1 1148 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 SKOR2Q2VWA4 1001 aaPredicted RBP7.21□□□□□ -1.26
VPS52-219ENST00000493379 DPCR1Q3MIW9 517 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 SV2CQ496J9 727 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 CCDC183Q5T5S1 534 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 TDRD10Q5VZ19 366 aaKnown RBP7.21□□□□□ -1.26
VPS52-219ENST00000493379 PLPP4Q5VZY2 271 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 CEP135Q66GS9 1140 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 KRT39Q6A163 491 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 ISM2Q6H9L7 571 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 KIAA1841Q6NSI8 718 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 ANKRD54Q6NXT1 300 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 FAM171BQ6P995 826 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 PDZD3Q86UT5 571 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 TRIM59Q8IWR1 403 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 TCEAL8Q8IYN2 117 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 LMO3Q8TAP4 145 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 EPS8L3Q8TE67 593 aaKnown RBP7.21□□□□□ -1.26
VPS52-219ENST00000493379 CASP10Q92851 521 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 CCDC127Q96BQ5 260 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 PKMYT1Q99640 499 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 ACBD6Q9BR61 282 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 ZCCHC2Q9C0B9 1178 aaKnown RBP7.21□□□□□ -1.26
VPS52-219ENST00000493379 TMEM8AQ9HCN3 771 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 BRD7Q9NPI1 651 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 ENTPD7Q9NQZ7 604 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 METTL5Q9NRN9 209 aaKnown RBP7.21□□□□□ -1.26
VPS52-219ENST00000493379 CDH22Q9UJ99 828 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 FBXL5Q9UKA1 691 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 SORCS3Q9UPU3 1222 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 NUB1Q9Y5A7 615 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 ASXL3Q9C0F0 2248 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 PLXNA4Q9HCM2 1894 aa7.21□□□□□ -1.26
VPS52-219ENST00000493379 SPTAN1Q13813 2472 aaKnown RBP7.21□□□□□ -1.26
VPS52-219ENST00000493379 ANK1P16157 1881 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 PDCD11Q14690 1871 aaKnown RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 CYB561D2O14569 222 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 ADAM12O43184 909 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 TGM5O43548 720 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 LETM1O95202 739 aaPredicted RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 VNN2O95498 520 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 DLATP10515 647 aaKnown RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 KRT13P13646 458 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 WARSP23381 471 aaKnown RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 KLRC2P26717 231 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 OR1D2P34982 312 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 LHX1P48742 406 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 MYL6P60660 151 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 YWHAHQ04917 246 aaPredicted RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 ITIH3Q06033 890 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 MYO1EQ12965 1108 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 EFHC2Q5JST6 749 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 WSCD1Q658N2 575 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 OVOS1Q6IE37 1185 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 ZC3H14Q6PJT7 736 aaKnown RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 PRSS55Q6UWB4 352 aaPredicted RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 UBALD2Q8IYN6 164 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 PDCL2Q8N4E4 241 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 HASPINQ8TF76 798 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 NOC3LQ8WTT2 800 aaKnown RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 KBTBD7Q8WVZ9 684 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 AUTS2Q8WXX7 1259 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 SYAP1Q96A49 352 aaPredicted RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 CRELD1Q96HD1 420 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 HPDLQ96IR7 371 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 B3GALT6Q96L58 329 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 BPIFA3Q9BQP9 254 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 SRRTQ9BXP5 876 aaKnown RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 BCO2Q9BYV7 579 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 ZCWPW1Q9H0M4 648 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 ADAM7Q9H2U9 754 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 CHRDQ9H2X0 955 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 THAP9Q9H5L6 903 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 AVENQ9NQS1 362 aaPredicted RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 DZANK1Q9NVP4 752 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 ZDHHC7Q9NXF8 308 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 ARMCX3Q9UH62 379 aaPredicted RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 AFF4Q9UHB7 1163 aaKnown RBP7.2□□□□□ -1.26
VPS52-219ENST00000493379 FBXW11Q9UKB1 542 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 L1RE1Q9UN81 338 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 KALRNO60229 2985 aa7.2□□□□□ -1.26
VPS52-219ENST00000493379 SCN1AP35498 2009 aa7.19□□□□□ -1.26
VPS52-219ENST00000493379 WDR27A2RRH5 827 aa7.19□□□□□ -1.26
VPS52-219ENST00000493379 GTPBP10A4D1E9 387 aaKnown RBP7.19□□□□□ -1.26
VPS52-219ENST00000493379 I3L4J1 428 aa7.19□□□□□ -1.26
VPS52-219ENST00000493379 NRG2O14511 850 aaPredicted RBP7.19□□□□□ -1.26
VPS52-219ENST00000493379 GIPC1O14908 333 aa7.19□□□□□ -1.26
VPS52-219ENST00000493379 TOP3BO95985 862 aaKnown RBP7.19□□□□□ -1.26
VPS52-219ENST00000493379 GLUD1P00367 558 aa7.19□□□□□ -1.26
VPS52-219ENST00000493379 HNRNPA1P09651 372 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS52-219ENST00000493379 ODC1P11926 461 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms