RNA–Protein interactions for RNA: ENST00000490140.1

FDPS-215, Transcript of farnesyl diphosphate synthase, human

TSL 2

Gene FDPS, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FDPS-215	ENST00000490140	XXYLT1	Q8NBI6	393 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	TXNDC5	Q8NBS9	432 aa	Known RBP	12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	B3GALNT2	Q8NCR0	500 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	GOLGA5	Q8TBA6	731 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	FBXO32	Q969P5	355 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	DUSP9	Q99956	384 aa	Known RBP	12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	ADAM33	Q9BZ11	813 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	TRIM9	Q9C026	710 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	DNAI2	Q9GZS0	605 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	DMAP1	Q9NPF5	467 aa	Predicted RBP	12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	AGPAT3	Q9NRZ7	376 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	COMMD8	Q9NX08	183 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	INVS	Q9Y283	1065 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	PTPRJ	Q12913	1337 aa		12.52	□□□□□ -0.41
FDPS-215	ENST00000490140	TBC1D3B	A6NDS4	549 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	SYT1	P21579	422 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	TIE1	P35590	1138 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	KDSR	Q06136	332 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	CYP24A1	Q07973	514 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	UAP1L1	Q3KQV9	507 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	HECTD3	Q5T447	861 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	HDDC3	Q8N4P3	179 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	IL17RC	Q8NAC3	791 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	HMGB4	Q8WW32	186 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	CCDC127	Q96BQ5	260 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	SMARCD1	Q96GM5	515 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	INTS4	Q96HW7	963 aa	Known RBP	12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	ZNF396	Q96N95	335 aa	Predicted RBP	12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	MED10	Q9BTT4	135 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	FGFBP2	Q9BYJ0	223 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	PANK2	Q9BZ23	570 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	KBTBD4	Q9NVX7	518 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	DEC1	Q9P2X7	70 aa		12.51	□□□□□ -0.41
FDPS-215	ENST00000490140	PI4KA	P42356	2102 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140		A0A0A0MRY4	1105 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	TCRBV21S2A2	A0A5A6	115 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	HOXC11	O43248	304 aa	Predicted RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	ZNF217	O75362	1048 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	CENPB	P07199	599 aa	Predicted RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	BCKDHB	P21953	392 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	NASP	P49321	788 aa	Predicted RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	CYP2J2	P51589	502 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	GFPT1	Q06210	699 aa	Predicted RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	BIRC3	Q13489	604 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	HNRNPD	Q14103	355 aa	Known RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	GAB4	Q2WGN9	574 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	ZNF699	Q32M78	642 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	SDE2	Q6IQ49	451 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	CNNM4	Q6P4Q7	775 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	RHBDF2	Q6PJF5	856 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	ZNF513	Q8N8E2	541 aa	Predicted RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	ZNF507	Q8TCN5	953 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	FAM84A	Q96KN4	292 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	USP28	Q96RU2	1077 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	MRPL45	Q9BRJ2	306 aa	Known RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	ZNF518B	Q9C0D4	1074 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	RNF38	Q9H0F5	515 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	FBXO44	Q9H4M3	255 aa		12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	NXF1	Q9UBU9	619 aa	Known RBP	12.5	□□□□□ -0.41
FDPS-215	ENST00000490140	ATRX	P46100	2492 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	ASCC3	Q8N3C0	2202 aa	Known RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	UPK3BL1	B0FP48	263 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	UPK3BL2	E5RIL1	263 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140		H0Y626	953 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	SGK1	O00141	431 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	SPTLC2	O15270	562 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	PPP6R2	O75170	966 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	TRIM16	O95361	564 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	CFI	P05156	583 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	PDIA4	P13667	645 aa	Known RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	KIR2DL1	P43626	348 aa	Predicted RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	IRX4	P78413	519 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	ZXDB	P98169	803 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	E2F5	Q15329	346 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	DUOXA1	Q1HG43	343 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	ANO4	Q32M45	955 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	ZNF667	Q5HYK9	610 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	LY6G5C	Q5SRR4	150 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	C10orf76	Q5T2E6	689 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	SNX30	Q5VWJ9	437 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	SLC23A3	Q6PIS1	610 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	TMEM92	Q6UXU6	159 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	EPM2AIP1	Q7L775	607 aa	Predicted RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	FAM35A	Q86V20	835 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	C12orf56	Q8IXR9	622 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	TERB1	Q8NA31	727 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	KDF1	Q8NAX2	398 aa	Predicted RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	RDH13	Q8NBN7	331 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	XPO6	Q96QU8	1125 aa	Known RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	VRTN	Q9H8Y1	702 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.49	□□□□□ -0.41	2e-6	■■■■■ 90.4
FDPS-215	ENST00000490140	SPHK2	Q9NRA0	654 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	TFIP11	Q9UBB9	837 aa	Known RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	SUSD2	Q9UGT4	822 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	LSM7	Q9UK45	103 aa	Known RBP	12.49	□□□□□ -0.41
FDPS-215	ENST00000490140	GON4L	Q3T8J9	2241 aa		12.49	□□□□□ -0.41
FDPS-215	ENST00000490140		A0A087X0B3	334 aa		12.48	□□□□□ -0.41
FDPS-215	ENST00000490140	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		12.48	□□□□□ -0.41
FDPS-215	ENST00000490140	PATE3	B3GLJ2	98 aa		12.48	□□□□□ -0.41
FDPS-215	ENST00000490140	CDX4	O14627	284 aa	Predicted RBP	12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 174.2 ms