RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 A1CFQ9NQ94 594 aaKnown RBP3.82□□□□□ -1.8
CPSF3-205ENST00000489629 TRNAU1APQ9NX07 287 aaKnown RBP3.82□□□□□ -1.8
CPSF3-205ENST00000489629 ZSCAN32Q9NX65 697 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 GAR1Q9NY12 217 aaKnown RBP3.82□□□□□ -1.8
CPSF3-205ENST00000489629 STK32BQ9NY57 414 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 TFCP2L1Q9NZI6 479 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 LPAR3Q9UBY5 353 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 PAXBP1Q9Y5B6 917 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 hCG_2014768A0A024R1R8 64 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 TRIM43BA6NCK2 446 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 MBD3L4A6NDZ8 208 aaPredicted RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 MBD3L3A6NE82 208 aaPredicted RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 TMEM232C9JQI7 657 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 H3BNC9 293 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 PSMD9O00233 223 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 DSCR3O14972 297 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 CD3EAPO15446 510 aaKnown RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 SPRY2O43597 315 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 FGBP02675 491 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 ATF7P17544 494 aaPredicted RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 SLC7A1P30825 629 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 UQCRC1P31930 480 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 DIO1P49895 249 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 CCT4P50991 539 aaKnown RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 TIRAPP58753 221 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 SUMO2P61956 95 aaKnown RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 KCTD20Q7Z5Y7 419 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 RAB11FIP4Q86YS3 637 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 CHPFQ8IZ52 775 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 NANOGP1Q8N7R0 232 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 NRACQ8N912 160 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 SPSB4Q96A44 273 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 TRIM43Q96BQ3 446 aaPredicted RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 SUCLG2Q96I99 432 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 PPP1R9BQ96SB3 815 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 WACQ9BTA9 647 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 VN1R3Q9BXE9 311 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 ZIM2Q9NZV7 527 aa3.81□□□□□ -1.8
CPSF3-205ENST00000489629 RGS17Q9UGC6 210 aaPredicted RBP3.81□□□□□ -1.8
CPSF3-205ENST00000489629 LY6G6EA0A0G2JKS1 128 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 CAPN8A6NHC0 703 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 SOCS2O14508 198 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 IKBKBO14920 756 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 CCP110O43303 1012 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 CTNND1O60716 968 aaKnown RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 SRGAP2O75044 1071 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 GCATO75600 419 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 PHKG2P15735 406 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 HOXD9P28356 352 aaPredicted RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 EPHA3P29320 983 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 THBS4P35443 961 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 EPHB1P54762 984 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 SUMO3P55854 103 aaPredicted RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 ANAPC15P60006 121 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 HTRA4P83105 476 aaPredicted RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 FHL1Q13642 323 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 ZNF268Q14587 947 aaPredicted RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 LARS2Q15031 903 aaKnown RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 SEC23BQ15437 767 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 NPY5RQ15761 445 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 INSCQ1MX18 579 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 C4orf46Q504U0 113 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 AWAT1Q58HT5 328 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 C10orf25Q5T742 122 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 APOA5Q6Q788 366 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 ZNF517Q6ZMY9 492 aaPredicted RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 IRF2BP2Q7Z5L9 587 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 PIP4P1Q86T03 277 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 IGFBPL1Q8WX77 278 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 MAP4K1Q92918 833 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 NMD3Q96D46 503 aaKnown RBP3.8□□□□□ -1.8
CPSF3-205ENST00000489629 WDYHV1Q96HA8 205 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 TRIM36Q9NQ86 728 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 CPNE7Q9UBL6 633 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 L1RE1Q9UN81 338 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 USP22Q9UPT9 525 aa3.8□□□□□ -1.8
CPSF3-205ENST00000489629 H7C4K7 107 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 PYCARD-AS1I3L0S3 204 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 AGPSO00116 658 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 ADAM10O14672 748 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 FRS3O43559 492 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 KLRC1P26715 233 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 PRKAR1BP31321 381 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 COPB1P53618 953 aaKnown RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 SRSF1Q07955 248 aaKnown RBP eCLIP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 LRRC41Q15345 812 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 CNN3Q15417 329 aaKnown RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 RBMS2Q15434 407 aaKnown RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 TWIST1Q15672 202 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 ZNF750Q32MQ0 723 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 ZNF260Q3ZCT1 412 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 CXorf57Q6NSI4 855 aaKnown RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 MRPL10Q7Z7H8 261 aaKnown RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 LIX1LQ8IVB5 337 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 RAVER1Q8IY67 606 aaKnown RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 OSR1Q8TAX0 266 aaPredicted RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 KAZALD1Q96I82 304 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 VCPIP1Q96JH7 1222 aa3.79□□□□□ -1.8
CPSF3-205ENST00000489629 ZBTB45Q96K62 511 aaPredicted RBP3.79□□□□□ -1.8
CPSF3-205ENST00000489629 DHX36Q9H2U1 1008 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms