RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KIR2DL1P43626 348 aaPredicted RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 SLC5A3P53794 718 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 CDH8P55286 799 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 SHC2P98077 582 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 CUL4BQ13620 913 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 KNOP1Q1ED39 458 aaKnown RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 FOXD4L5Q5VV16 416 aaPredicted RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 PSAPL1Q6NUJ1 521 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 SCARA5Q6ZMJ2 495 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 PAQR9Q6ZVX9 377 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 ALLCQ8N6M5 410 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 IL17RCQ8NAC3 791 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 TXNDC5Q8NBS9 432 aaKnown RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 PDZD8Q8NEN9 1154 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 OLIG1Q8TAK6 271 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 FOXD4L4Q8WXT5 416 aaPredicted RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 OVCA2Q8WZ82 227 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 ELMO3Q96BJ8 720 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 KCNK16Q96T55 309 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 PNKPQ96T60 521 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 VRTNQ9H8Y1 702 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 CGNQ9P2M7 1197 aaKnown RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 TNRC6BQ9UPQ9 1833 aaKnown RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 ACACBO00763 2458 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 PLXND1Q9Y4D7 1925 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-204ENST00000489403 PVALEFA0A1B0GWK0 134 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 E2F8A0AVK6 867 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 C4orf47A7E2U8 309 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 PATE3B3GLJ2 98 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 SGK1O00141 431 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 TNFRSF10BO14763 440 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 EXOC3O60645 756 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 KLF8O95600 359 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-204ENST00000489403 ADH1CP00326 375 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 APODP05090 189 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 AFMP43652 599 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 KDSRQ06136 332 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 ZNF699Q32M78 642 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 FOXD4L6Q3SYB3 417 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-204ENST00000489403 LY6G5CQ5SRR4 150 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 EMC10Q5UCC4 262 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 FOXD4L3Q6VB84 417 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-204ENST00000489403 CYP2U1Q7Z449 544 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 TTC30AQ86WT1 665 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 GRAMD1CQ8IYS0 662 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 PHTF2Q8N3S3 785 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 SCAMP5Q8TAC9 235 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 PARD3BQ8TEW8 1205 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 MED10Q9BTT4 135 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 SDCBP2Q9H190 292 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 CCSER2Q9H7U1 834 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 ZDHHC4Q9NPG8 344 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 ARHGEF4Q9NR80 690 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 TBC1D14Q9P2M4 693 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 CHORDC1Q9UHD1 332 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-204ENST00000489403 PCDHA7Q9UN72 937 aa13.16□□□□□ -0.3
CPSF3-204ENST00000489403 ATP8B3O60423 1300 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 A0A0A0MRY4 1105 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.15□□□□□ -0.3
CPSF3-204ENST00000489403 KLRC4O43908 158 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 ALDH1A2O94788 518 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 VNN1O95497 513 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 C4BPAP04003 597 aaKnown RBP13.15□□□□□ -0.3
CPSF3-204ENST00000489403 P2RY2P41231 377 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 CLDN10P78369 228 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 BIRC3Q13489 604 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 NCOA4Q13772 614 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 HSF5Q4G112 596 aaPredicted RBP13.15□□□□□ -0.3
CPSF3-204ENST00000489403 ZNF667Q5HYK9 610 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 HECTD3Q5T447 861 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 SNX30Q5VWJ9 437 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 ETFBKMTQ8IXQ9 262 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 ZMIZ2Q8NF64 920 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 RLN3Q8WXF3 142 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 OTUB2Q96DC9 234 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 SMARCD1Q96GM5 515 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 BACH2Q9BYV9 841 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 POLMQ9NP87 494 aaPredicted RBP13.15□□□□□ -0.3
CPSF3-204ENST00000489403 DMAP1Q9NPF5 467 aaPredicted RBP13.15□□□□□ -0.3
CPSF3-204ENST00000489403 FAM13BQ9NYF5 915 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 IL37Q9NZH6 218 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 GMIPQ9P107 970 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 SH3BP1Q9Y3L3 701 aa13.15□□□□□ -0.3
CPSF3-204ENST00000489403 MAP1BP46821 2468 aaKnown RBP13.14□□□□□ -0.31
CPSF3-204ENST00000489403 FAM92AA1XBS5 289 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 CDX4O14627 284 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-204ENST00000489403 GIPC1O14908 333 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 KHNYNO15037 678 aaKnown RBP13.14□□□□□ -0.31
CPSF3-204ENST00000489403 HOXC11O43248 304 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-204ENST00000489403 ADAM23O75077 832 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 AP1G2O75843 785 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 BEST1O76090 585 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 CLSTN1O94985 981 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 ZDHHC11BP0C7U3 371 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 GRIA2P42262 883 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 TNFRSF4P43489 277 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 DHPSP49366 369 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-204ENST00000489403 TUBP50607 506 aa13.14□□□□□ -0.31
CPSF3-204ENST00000489403 NOVA1P51513 510 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms