RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 NT5C3BQ969T7 300 aa12.05□□□□□ -0.48
C9orf3-220ENST00000489318 SLC2A13Q96QE2 648 aa12.05□□□□□ -0.48
C9orf3-220ENST00000489318 PSMB7Q99436 277 aa12.05□□□□□ -0.48
C9orf3-220ENST00000489318 CARD6Q9BX69 1037 aa12.05□□□□□ -0.48
C9orf3-220ENST00000489318 ULBP1Q9BZM6 244 aa12.05□□□□□ -0.48
C9orf3-220ENST00000489318 CDY1Q9Y6F8 540 aa12.05□□□□□ -0.48
C9orf3-220ENST00000489318 MKI67P46013 3256 aaKnown RBP12.05□□□□□ -0.48
C9orf3-220ENST00000489318 FAM92AA1XBS5 289 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 WDR27A2RRH5 827 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 ZBED1O96006 694 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 CPB1P15086 417 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 ATP2A2P16615 1042 aaKnown RBP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 CYP2F1P24903 491 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 SDC4P31431 198 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 MATKP42679 507 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 CREMQ03060 361 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 CLUL1Q15846 466 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 CCDC14Q49A88 953 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 CC2D1AQ6P1N0 951 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 LRRN4CLQ8ND94 238 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 MNS1Q8NEH6 495 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 FBXO22Q8NEZ5 403 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 RXFP2Q8WXD0 754 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 RIN2Q8WYP3 895 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 RNPC3Q96LT9 517 aaKnown RBP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 NCAPGQ9BPX3 1015 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 LBHD1Q9BQE6 289 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 CLSTN3Q9BQT9 956 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 DDX23Q9BUQ8 820 aaKnown RBP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 ZBP1Q9H171 429 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 ABI2Q9NYB9 513 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 IL37Q9NZH6 218 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.04□□□□□ -0.48
C9orf3-220ENST00000489318 RWDD3Q9Y3V2 267 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 PCDHB12Q9Y5F1 795 aa12.04□□□□□ -0.48
C9orf3-220ENST00000489318 ATG2AQ2TAZ0 1938 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 CTAGE15A4D2H0 777 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 EFCAB8A8MWE9 144 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 PGRMC1O00264 195 aaKnown RBP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 LILRB3O75022 631 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 FGF18O76093 207 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 ENDOD1O94919 500 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 ABLIM3O94929 683 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 URODP06132 367 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 FYNP06241 537 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 CTAGE8P0CG41 777 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 HAPLN1P10915 354 aaPredicted RBP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 TCF4P15884 667 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 PDGFRAP16234 1089 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 PTPN7P35236 360 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 NDUFV1P49821 464 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 DNA2P51530 1060 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 SLC5A3P53794 718 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 YWHAZP63104 245 aaKnown RBP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 OTUD1Q5VV17 481 aaPredicted RBP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 DAB2IPQ5VWQ8 1189 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 TPGS2Q68CL5 300 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 RNF19BQ6ZMZ0 732 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 CYP4V2Q6ZWL3 525 aaPredicted RBP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 RSRC2Q7L4I2 434 aaKnown RBP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 STRADAQ7RTN6 431 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 CTAGE6Q86UF2 777 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 CTAGE4Q8IX94 777 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 EXD1Q8NHP7 514 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 CAPZA3Q96KX2 299 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 SPATA17Q96L03 361 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 NPY6RQ99463 290 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 TRIM62Q9BVG3 475 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 CRISPLD1Q9H336 500 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 POPDC2Q9HBU9 364 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 RXFP1Q9HBX9 757 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 COMMD8Q9NX08 183 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 FNIP2Q9P278 1114 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 AFF4Q9UHB7 1163 aaKnown RBP12.03□□□□□ -0.48
C9orf3-220ENST00000489318 MAFFQ9ULX9 164 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 LZTS1Q9Y250 596 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 OBSL1O75147 1896 aa12.03□□□□□ -0.48
C9orf3-220ENST00000489318 LCHNA4D1U4 455 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 YJEFN3A6XGL0 299 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 E7ENQ6 273 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 C5orf67F2Z3F1 127 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 ADAM12O43184 909 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 TLL1O43897 1013 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 GRAP2O75791 330 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 RNF8O76064 485 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 LTFP02788 710 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 KRT7P08729 469 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 CTSAP10619 480 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 PYGMP11217 842 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 DESP17661 470 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 IL1R2P27930 398 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 NOS2P35228 1153 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 GRIK1P39086 918 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 PAFAH1B1P43034 410 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 RABGGTBP53611 331 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 HDAC4P56524 1084 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 TUBB4BP68371 445 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 RAB33AQ14088 237 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms