RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 MAP2K6P52564 334 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 ASIC2Q16515 512 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 ZNF750Q32MQ0 723 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 MGAT5BQ3V5L5 792 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 C9orf50Q5SZB4 431 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 PRR18Q8N4B5 295 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 IGFBPL1Q8WX77 278 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 NR4A3Q92570 626 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 FAM126AQ9BYI3 521 aaPredicted RBP4.18□□□□□ -1.74
SMC4-220ENST00000488017 MRPL44Q9H9J2 332 aaKnown RBP4.18□□□□□ -1.74
SMC4-220ENST00000488017 SNX15Q9NRS6 342 aa4.18□□□□□ -1.74
SMC4-220ENST00000488017 VNN1O95497 513 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 FGF2P09038 288 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 PDCP20941 246 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 KCNA3P22001 575 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 B4GALNT1Q00973 533 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 DCDC5Q6ZRR9 648 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 PNMA8AQ86V59 439 aaPredicted RBP4.17□□□□□ -1.74
SMC4-220ENST00000488017 ZNF280BQ86YH2 543 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 ZNF479Q96JC4 524 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 NLRP4Q96MN2 994 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 TRHDEQ9UKU6 1024 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 TMX2Q9Y320 296 aa4.17□□□□□ -1.74
SMC4-220ENST00000488017 PRSS47A8MTI9 375 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 GABRDO14764 452 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 THP07101 528 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 NGFRP08138 427 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 CDC25AP30304 524 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 NKX6-1P78426 367 aaPredicted RBP4.16□□□□□ -1.74
SMC4-220ENST00000488017 KRT17Q04695 432 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 MLC1Q15049 377 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 ZIK1Q3SY52 487 aaPredicted RBP4.16□□□□□ -1.74
SMC4-220ENST00000488017 PDXDC1Q6P996 788 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 GAS2L3Q86XJ1 694 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 RFX6Q8HWS3 928 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 FOXP4Q8IVH2 680 aaPredicted RBP4.16□□□□□ -1.74
SMC4-220ENST00000488017 C16orf71Q8IYS4 520 aaPredicted RBP4.16□□□□□ -1.74
SMC4-220ENST00000488017 MAFAQ8NHW3 353 aaPredicted RBP4.16□□□□□ -1.74
SMC4-220ENST00000488017 WBP1Q96G27 269 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 C17orf80Q9BSJ5 609 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 SLC13A1Q9BZW2 595 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 PRKAB1Q9Y478 270 aa4.16□□□□□ -1.74
SMC4-220ENST00000488017 H3BUI4 141 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 ATF7P17544 494 aaPredicted RBP4.15□□□□□ -1.75
SMC4-220ENST00000488017 DIO1P49895 249 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 PGGT1BP53609 377 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 UCP3P55916 312 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 STIM1Q13586 685 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 PLS1Q14651 629 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 KCNB1Q14721 858 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 MANEAQ5SRI9 462 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 DDX42Q86XP3 938 aaKnown RBP eCLIP4.15□□□□□ -1.75
SMC4-220ENST00000488017 SARS2Q9NP81 518 aaKnown RBP4.15□□□□□ -1.75
SMC4-220ENST00000488017 MED16Q9Y2X0 877 aa4.15□□□□□ -1.75
SMC4-220ENST00000488017 MYO1CO00159 1063 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 CLSTN1O94985 981 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 GAS8-AS1O95177 125 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 ZRANB2O95218 330 aaKnown RBP eCLIP4.14□□□□□ -1.75
SMC4-220ENST00000488017 IL6STP40189 918 aaPredicted RBP4.14□□□□□ -1.75
SMC4-220ENST00000488017 CPA2P48052 419 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 SLC11A2P49281 568 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 PRKAG1P54619 331 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 ODF1Q14990 250 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 KHDC1LQ5JSQ8 128 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 CERCAMQ5T4B2 595 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 GFI1BQ5VTD9 330 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 CAPRIN2Q6IMN6 1127 aaKnown RBP4.14□□□□□ -1.75
SMC4-220ENST00000488017 USP45Q70EL2 814 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 WIPF2Q8TF74 440 aaPredicted RBP4.14□□□□□ -1.75
SMC4-220ENST00000488017 DNASE2BQ8WZ79 361 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 SLC25A28Q96A46 364 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 CTHRC1Q96CG8 243 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 SLC35A4Q96G79 324 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 HS6ST2Q96MM7 605 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 KRTAP4-3Q9BYR4 195 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 GJB4Q9NTQ9 266 aa4.14□□□□□ -1.75
SMC4-220ENST00000488017 TTBK1Q5TCY1 1321 aaPredicted RBP4.14□□□□□ -1.75
SMC4-220ENST00000488017 TMPRSS11DO60235 418 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 SYF2O95926 243 aaKnown RBP4.13□□□□□ -1.75
SMC4-220ENST00000488017 CD63P08962 238 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 TACR3P29371 465 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 BCAT1P54687 386 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 YPEL5P62699 121 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 CFHR3Q02985 330 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 CCNIQ14094 377 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 INPP5JQ15735 1006 aaPredicted RBP4.13□□□□□ -1.75
SMC4-220ENST00000488017 CC2D1BQ5T0F9 858 aaKnown RBP4.13□□□□□ -1.75
SMC4-220ENST00000488017 ZNF324BQ6AW86 544 aaPredicted RBP4.13□□□□□ -1.75
SMC4-220ENST00000488017 SDE2Q6IQ49 451 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 LPAR3Q9UBY5 353 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 PCDHA6Q9UN73 950 aa4.13□□□□□ -1.75
SMC4-220ENST00000488017 DRG1Q9Y295 367 aaKnown RBP4.13□□□□□ -1.75
SMC4-220ENST00000488017 ACOT8O14734 319 aa4.12□□□□□ -1.75
SMC4-220ENST00000488017 SPTLC2O15270 562 aa4.12□□□□□ -1.75
SMC4-220ENST00000488017 DCAF12L1Q5VU92 463 aa4.12□□□□□ -1.75
SMC4-220ENST00000488017 ZNF793Q6ZN11 406 aa4.12□□□□□ -1.75
SMC4-220ENST00000488017 BPIFB1Q8TDL5 484 aa4.12□□□□□ -1.75
SMC4-220ENST00000488017 TMEM171Q8WVE6 324 aa4.12□□□□□ -1.75
SMC4-220ENST00000488017 MTFMTQ96DP5 389 aaKnown RBP4.12□□□□□ -1.75
SMC4-220ENST00000488017 HIC2Q96JB3 615 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms