RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 TICAM2Q86XR7 235 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 RAB11FIP4Q86YS3 637 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 MFSD4AQ8N468 514 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 HDDC3Q8N4P3 179 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ZNF461Q8TAF7 563 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 IGDCC4Q8TDY8 1250 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ADAMTS14Q8WXS8 1223 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 TMEM87BQ96K49 555 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 HSPA12BQ96MM6 686 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 CAMK1GQ96NX5 476 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 LRRC3BQ96PB8 259 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 TMEM209Q96SK2 561 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 MAP3K14Q99558 947 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 GTPBP2Q9BX10 602 aaKnown RBP5.89□□□□□ -1.47
PTPN4-210ENST00000485247 TRIM6Q9C030 488 aaPredicted RBP5.89□□□□□ -1.47
PTPN4-210ENST00000485247 TRPV4Q9HBA0 871 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 CYP4F11Q9HBI6 524 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 TMEM74BQ9NUR3 256 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 MTRRQ9UBK8 725 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 EVLQ9UI08 416 aaPredicted RBP5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ST14Q9Y5Y6 855 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 APC2O95996 2303 aa5.89□□□□□ -1.47
PTPN4-210ENST00000485247 ZNF462Q96JM2 2506 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ATG2BQ96BY7 2078 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 A0A087WV48 116 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 SMCO2A6NFE2 343 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 UPK3BL1B0FP48 263 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 UPK3BL2E5RIL1 263 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 TSPAN1O60635 241 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 OPHN1O60890 802 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 CILPO75339 1184 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 MAFO75444 373 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 DDAH1O94760 285 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 STBD1O95210 358 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 SEC24AO95486 1093 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 APBB3O95704 486 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 F13A1P00488 732 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 EGFP01133 1207 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 PF4P02776 101 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 CFIP05156 583 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 FTH1P19P0C7X4 201 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 IGFBP6P24592 240 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ARPP19P56211 112 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ANTXR2P58335 489 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 SETQ01105 290 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ROR1Q01973 937 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 SRSF1Q07955 248 aaKnown RBP eCLIP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 GRSF1Q12849 480 aaKnown RBP eCLIP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ELAVL2Q12926 359 aaKnown RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 CAMK2GQ13555 558 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 TRIP6Q15654 476 aaKnown RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 USP39Q53GS9 565 aaKnown RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 XKR3Q5GH77 459 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ANKRD45Q5TZF3 282 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 PLA2G4FQ68DD2 849 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 FSTL4Q6MZW2 842 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 SLC23A3Q6PIS1 610 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 HAUS6Q7Z4H7 955 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 RALYLQ86SE5 291 aaKnown RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 CDH24Q86UP0 819 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 CDR2LQ86X02 465 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 MARCH9Q86YJ5 346 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ARID3BQ8IVW6 561 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 HACE1Q8IYU2 909 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ELMOD1Q8N336 334 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 RNF149Q8NC42 400 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 OR2I1PQ8NGU4 316 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 PRPF31Q8WWY3 499 aaKnown RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 GJA10Q969M2 543 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 TMEM143Q96AN5 459 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 E2F7Q96AV8 911 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ZNF512Q96ME7 567 aaPredicted RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 TPSD1Q9BZJ3 242 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 CSRNP2Q9H175 543 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ATP13A1Q9HD20 1204 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 DIAPH3Q9NSV4 1193 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 CEP72Q9P209 647 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 VTI1BQ9UEU0 232 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 EBF1Q9UH73 591 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 ATXN2Q99700 1313 aaKnown RBP5.88□□□□□ -1.47
PTPN4-210ENST00000485247 MYO18BQ8IUG5 2567 aa5.88□□□□□ -1.47
PTPN4-210ENST00000485247 VWA8A3KMH1 1905 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 PLXNB3Q9ULL4 1909 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 H3BS24 57 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 CAPN9O14815 690 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 SH3BP5O60239 455 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 GAS7O60861 476 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 ABLIM3O94929 683 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 NPTXRO95502 500 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 CBX7O95931 251 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 PRKCBP05771 671 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 CYP3A4P08684 503 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 CD59P13987 128 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 ATF2P15336 505 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 U2AF2P26368 475 aaKnown RBP eCLIP5.87□□□□□ -1.473e-6■■■□□ 15.4
PTPN4-210ENST00000485247 ITPKBP27987 946 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 TKTP29401 623 aaKnown RBP5.87□□□□□ -1.47
PTPN4-210ENST00000485247 AXLP30530 894 aa5.87□□□□□ -1.47
PTPN4-210ENST00000485247 SFNP31947 248 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms