RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	MON1A	Q86VX9	555 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	CMTM8	Q8IZV2	173 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	SECISBP2L	Q93073	1101 aa	Known RBP	10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	FAM81B	Q96LP2	452 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	SLITRK1	Q96PX8	696 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	SLC22A12	Q96S37	553 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	CYP2S1	Q96SQ9	504 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	GPR88	Q9GZN0	384 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	GAN	Q9H2C0	597 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	TSPY26P	Q9H489	355 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	ZFP14	Q9HCL3	533 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	EHD2	Q9NZN4	543 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	CHORDC1	Q9UHD1	332 aa	Predicted RBP	10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	KIAA1257	Q9ULG3	409 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	CNTN6	Q9UQ52	1028 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	CCL26	Q9Y258	94 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	SIK3	Q9Y2K2	1263 aa		10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	MTCL1	Q9Y4B5	1905 aa	Known RBP	10.84	□□□□□ -0.67
HDAC6-222	ENST00000478095	LRRC10B	A6NIK2	292 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	HEPACAM2	A8MVW5	462 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	GOLGA6L19	H0YKK7	550 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	PIK3R2	O00459	728 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	DPYSL4	O14531	572 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	XPO1	O14980	1071 aa	Known RBP	10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	ECI2	O75521	394 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	SERPINC1	P01008	464 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	CKM	P06732	381 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	KIF11	P52732	1056 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	POLR2F	P61218	127 aa	Known RBP	10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	GPC5	P78333	572 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	CNGA2	Q16280	664 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	DENND1B	Q6P3S1	775 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	LRSAM1	Q6UWE0	723 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	SLC47A2	Q86VL8	602 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	ARL14EP	Q8N8R7	260 aa	Predicted RBP	10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	RNF214	Q8ND24	703 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	RIN3	Q8TB24	985 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	EDA	Q92838	391 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	NXPE3	Q969Y0	559 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	ELSPBP1	Q96BH3	223 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	LRRC3B	Q96PB8	259 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	NAA15	Q9BXJ9	866 aa	Known RBP	10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	FBXO44	Q9H4M3	255 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	PNPLA8	Q9NP80	782 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	NLRC4	Q9NPP4	1024 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	PLCB1	Q9NQ66	1216 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	DUSP12	Q9UNI6	340 aa		10.83	□□□□□ -0.68
HDAC6-222	ENST00000478095	NOTCH4	Q99466	2003 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	TRAV19	A0A0A6YYK7	116 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095		A0A1W2PQH9	124 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	FAM170A	A1A519	330 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	FAM92A	A1XBS5	289 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095		F8VZ95	297 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	CAVIN2	O95810	425 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	USP17L7	P0C7H9	530 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	SETSIP	P0DME0	302 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	SRF	P11831	508 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	LCP1	P13796	627 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	HDC	P19113	662 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	RFX1	P22670	979 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	DDX6	P26196	483 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	CLCN1	P35523	988 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	PLA2G4A	P47712	749 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	TKTL1	P51854	596 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	ADIG	Q0VDE8	80 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	STIL	Q15468	1287 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	FILIP1L	Q4L180	1135 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	PKDCC	Q504Y2	493 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	PMF1	Q6P1K2	205 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	PASD1	Q8IV76	773 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	UBALD2	Q8IYN6	164 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	FAM71A	Q8IYT1	594 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	ZNF454	Q8N9F8	522 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	PDZD8	Q8NEN9	1154 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	NEK11	Q8NG66	645 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	ZNF606	Q8WXB4	792 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	OVCA2	Q8WZ82	227 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	NDRG1	Q92597	394 aa	Known RBP	10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	USP13	Q92995	863 aa	Predicted RBP	10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	ULBP1	Q9BZM6	244 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	RNF38	Q9H0F5	515 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	CCSER2	Q9H7U1	834 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	NMUR1	Q9HB89	426 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	TRPV4	Q9HBA0	871 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	LRRC4	Q9HBW1	653 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	COMMD8	Q9NX08	183 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	OSER1	Q9NX31	292 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	SMPD4	Q9NXE4	827 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	IL37	Q9NZH6	218 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	SCML2	Q9UQR0	700 aa		10.82	□□□□□ -0.68
HDAC6-222	ENST00000478095	DOCK6	Q96HP0	2047 aa		10.81	□□□□□ -0.68
HDAC6-222	ENST00000478095		A0A1B0GTH6	734 aa		10.81	□□□□□ -0.68
HDAC6-222	ENST00000478095	SCAMP3	O14828	347 aa	Known RBP	10.81	□□□□□ -0.68
HDAC6-222	ENST00000478095	COCH	O43405	550 aa		10.81	□□□□□ -0.68
HDAC6-222	ENST00000478095	MED7	O43513	233 aa		10.81	□□□□□ -0.68
HDAC6-222	ENST00000478095	GFPT2	O94808	682 aa		10.81	□□□□□ -0.68
HDAC6-222	ENST00000478095	OAS1	P00973	400 aa	Known RBP	10.81	□□□□□ -0.68
HDAC6-222	ENST00000478095	ZDHHC11B	P0C7U3	371 aa		10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms