RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 KCNE1P15382 129 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 PNPLA4P41247 253 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 MAGEA6P43360 314 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 ORC1Q13415 861 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 CCDC38Q502W7 563 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 CRYBG2Q8N1P7 616 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 NPLOC4Q8TAT6 608 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 CCT8L1PA6NM43 557 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 ANKRD65E5RJM6 399 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 PIRO00625 290 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 SNX3O60493 162 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 CD48P09326 243 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 PDGFRAP16234 1089 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 LIG3P49916 1009 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 GDF10P55107 478 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 EIF3EP60228 445 aaKnown RBP12.76□□□□□ -0.37
PTPRF-212ENST00000477970 CCDC14Q49A88 953 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 KCNT1Q5JUK3 1230 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 C9orf57Q5W0N0 161 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 SLC9A4Q6AI14 798 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 MICALL1Q8N3F8 863 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 ATP11CQ8NB49 1132 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 UBA3Q8TBC4 463 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 CENPIQ92674 756 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-212ENST00000477970 GRAMD1AQ96CP6 724 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 ZMAT2Q96NC0 199 aaKnown RBP12.76□□□□□ -0.37
PTPRF-212ENST00000477970 RNF157Q96PX1 679 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 ZNF670Q9BS34 389 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 TRIP11Q15643 1979 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 PLCB3Q01970 1234 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 PPP1R26Q5T8A7 1209 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-212ENST00000477970 OR6B2Q6IFH4 312 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 TTC30AQ86WT1 665 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 CCDC13Q8IYE1 715 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 TMEM130Q8N3G9 435 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 DENND1AQ8TEH3 1009 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 KAT2BQ92831 832 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 KHSRPQ92945 711 aaKnown RBP eCLIP12.76□□□□□ -0.37
PTPRF-212ENST00000477970 MRPL45Q9BRJ2 306 aaKnown RBP12.76□□□□□ -0.37
PTPRF-212ENST00000477970 NKIRAS1Q9NYS0 192 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 PSMC3IPQ9P2W1 217 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-212ENST00000477970 SCN1AP35498 2009 aa12.76□□□□□ -0.37
PTPRF-212ENST00000477970 FAM47DPA6NHR8 397 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 CHADO15335 359 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 ADCY6O43306 1168 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 XPOTO43592 962 aaKnown RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 PRPSAP2O60256 369 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 DNAJC8O75937 253 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 HOXC8P31273 242 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 ROR1Q01973 937 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 KLHL38Q2WGJ6 581 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 CATSPER4Q7RTX7 472 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 HAUS1Q96CS2 278 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 ZNF560Q96MR9 790 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 SETD4Q9NVD3 440 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 SNTG2Q9NY99 539 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 BCLAF3A2AJT9 711 aaKnown RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 SPAG6O75602 509 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 FAM155BO75949 473 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 IGHA2P01877 340 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 GEMIN4P57678 1058 aaKnown RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 GPX6P59796 221 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 PDIA2Q13087 525 aaKnown RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 PACS2Q86VP3 889 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 UNC45BQ8IWX7 931 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 ZBED8Q8IZ13 594 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 PPP1R16BQ96T49 567 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 MAK16Q9BXY0 300 aaKnown RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 ACSS3Q9H6R3 686 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 PCSK1NQ9UHG2 260 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 RABGEF1Q9UJ41 708 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 CLUHO75153 1309 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 RBP3P10745 1247 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 CREB1P16220 341 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 ACADSBP45954 432 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 RNASELQ05823 741 aaKnown RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 MPP2Q14168 576 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 KCNJ11Q14654 390 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 KIZQ2M2Z5 673 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 RNF187Q5TA31 235 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-212ENST00000477970 PMF1Q6P1K2 205 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 SLC26A9Q7LBE3 791 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 NME8Q8N427 588 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 DYDC1Q8WWB3 177 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 HSPH1Q92598 858 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 PNPLA8Q9NP80 782 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 HESX1Q9UBX0 185 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 NME7Q9Y5B8 376 aa12.75□□□□□ -0.37
PTPRF-212ENST00000477970 RASA4BC9J798 803 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 RASA4O43374 803 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 IL4RP24394 825 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 CDH6P55285 790 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 BST2Q10589 180 aaKnown RBP12.74□□□□□ -0.37
PTPRF-212ENST00000477970 FASTKD3Q14CZ7 662 aaKnown RBP12.74□□□□□ -0.37
PTPRF-212ENST00000477970 ADGRD1Q6QNK2 874 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 ANKRD52Q8NB46 1076 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 SPATA18Q8TC71 538 aa12.74□□□□□ -0.37
PTPRF-212ENST00000477970 EIF2AQ9BY44 585 aaKnown RBP12.74□□□□□ -0.37
PTPRF-212ENST00000477970 PAK5Q9P286 719 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms