RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 CISHQ9NSE2 258 aa18.99■□□□□ 0.63
UPF3A-203ENST00000474056 GMIPQ9P107 970 aa18.99■□□□□ 0.63
UPF3A-203ENST00000474056 CHORDC1Q9UHD1 332 aaPredicted RBP18.99■□□□□ 0.63
UPF3A-203ENST00000474056 FAM92AA1XBS5 289 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 HHLA1C9JL84 531 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 ANP32AP39687 249 aaKnown RBP18.98■□□□□ 0.63
UPF3A-203ENST00000474056 CCINQ13939 588 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 LRRC32Q14392 662 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 CAMK4Q16566 473 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 ZNF528Q3MIS6 628 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 NAIF1Q69YI7 327 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-203ENST00000474056 Q6ZS52 159 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 IER2Q9BTL4 223 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 ECT2Q9H8V3 914 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 METTL14Q9HCE5 456 aaKnown RBP18.98■□□□□ 0.63
UPF3A-203ENST00000474056 COMMD8Q9NX08 183 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 SMPD4Q9NXE4 827 aa18.98■□□□□ 0.63
UPF3A-203ENST00000474056 BICDL2A1A5D9 508 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 ZDHHC11BP0C7U3 371 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 MBL2P11226 248 aaPredicted RBP18.97■□□□□ 0.63
UPF3A-203ENST00000474056 GJA4P35212 333 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 FMO5P49326 533 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 PGFP49763 221 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 PAK1Q13153 545 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 DGKKQ5KSL6 1271 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 SLC4A11Q8NBS3 891 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 ATP2A3Q93084 1043 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 LINC00597Q9H2U6 94 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 CCSER2Q9H7U1 834 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 KIAA1468Q9P260 1216 aa18.97■□□□□ 0.63
UPF3A-203ENST00000474056 SCAMP3O14828 347 aaKnown RBP18.96■□□□□ 0.63
UPF3A-203ENST00000474056 COCHO43405 550 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 RAD23BP54727 409 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 SATB1Q01826 763 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 LRMPQ12912 555 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 HECTD3Q5T447 861 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 SNX30Q5VWJ9 437 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 FOXR2Q6PJQ5 311 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 ZC3H14Q6PJT7 736 aaKnown RBP18.96■□□□□ 0.63
UPF3A-203ENST00000474056 CPA6Q8N4T0 437 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 TRIML1Q8N9V2 468 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 TMEM176AQ96HP8 235 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 HEXIM2Q96MH2 286 aaKnown RBP18.96■□□□□ 0.63
UPF3A-203ENST00000474056 FBXO44Q9H4M3 255 aa18.96■□□□□ 0.63
UPF3A-203ENST00000474056 TRDMT1O14717 391 aaKnown RBP18.95■□□□□ 0.62
UPF3A-203ENST00000474056 TDGF1P13385 188 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 ACO1P21399 889 aaKnown RBP18.95■□□□□ 0.62
UPF3A-203ENST00000474056 CCR3P51677 355 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 CUL2Q13617 745 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 TMEM196Q5HYL7 178 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 FSTL4Q6MZW2 842 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 MAMSTRQ6ZN01 415 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 TTC39CQ8N584 583 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 ZFRQ96KR1 1074 aaKnown RBP18.95■□□□□ 0.62
UPF3A-203ENST00000474056 DUSP16Q9BY84 665 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 PNPLA8Q9NP80 782 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 CFAP97Q9P2B7 532 aa18.95■□□□□ 0.62
UPF3A-203ENST00000474056 MYO18AQ92614 2054 aaKnown RBP18.95■□□□□ 0.62
UPF3A-203ENST00000474056 EML5Q05BV3 1969 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 CYP26A1O43174 497 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 TUBP50607 506 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 SPEM1Q8N4L4 309 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 UBR7Q8N806 425 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 NELL1Q92832 810 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 SRRTQ9BXP5 876 aaKnown RBP18.94■□□□□ 0.62
UPF3A-203ENST00000474056 DNAI2Q9GZS0 605 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 FAM124BQ9H5Z6 455 aaPredicted RBP18.94■□□□□ 0.62
UPF3A-203ENST00000474056 FBRSL1Q9HCM7 1045 aaKnown RBP18.94■□□□□ 0.62
UPF3A-203ENST00000474056 C2orf42Q9NWW7 574 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 OTOGLQ3ZCN5 2332 aa18.94■□□□□ 0.62
UPF3A-203ENST00000474056 EP300Q09472 2414 aaPredicted RBP18.93■□□□□ 0.62
UPF3A-203ENST00000474056 PMM2O15305 246 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 NFATC1O95644 943 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 EGFP01133 1207 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 CXCL12P48061 93 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 GALK1P51570 392 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 KIF11P52732 1056 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 AMPD2Q01433 879 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 GRSF1Q12849 480 aaKnown RBP eCLIP18.93■□□□□ 0.62
UPF3A-203ENST00000474056 ARHGAP17Q68EM7 881 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 PKN3Q6P5Z2 889 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 DDX42Q86XP3 938 aaKnown RBP eCLIP18.93■□□□□ 0.62
UPF3A-203ENST00000474056 TRIM59Q8IWR1 403 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 SYNPOQ8N3V7 929 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 ZBTB44Q8NCP5 570 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 P2RY13Q9BPV8 354 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 SEMA4AQ9H3S1 761 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 TLR8Q9NR97 1041 aaKnown RBP18.93■□□□□ 0.62
UPF3A-203ENST00000474056 OSER1Q9NX31 292 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 ZSCAN32Q9NX65 697 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 SCML2Q9UQR0 700 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 PCDHGA2Q9Y5H1 932 aa18.93■□□□□ 0.62
UPF3A-203ENST00000474056 SPAG17Q6Q759 2223 aa18.92■□□□□ 0.62
UPF3A-203ENST00000474056 TLR5O60602 858 aa18.92■□□□□ 0.62
UPF3A-203ENST00000474056 LMNAP02545 664 aaKnown RBP18.92■□□□□ 0.62
UPF3A-203ENST00000474056 CYP17A1P05093 508 aa18.92■□□□□ 0.62
UPF3A-203ENST00000474056 MARSP56192 900 aaKnown RBP18.92■□□□□ 0.62
UPF3A-203ENST00000474056 NR1H3Q13133 447 aa18.92■□□□□ 0.62
UPF3A-203ENST00000474056 LMO3Q8TAP4 145 aa18.92■□□□□ 0.62
UPF3A-203ENST00000474056 CD101Q93033 1021 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms