RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 DLC1Q96QB1 1528 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 OVOS2A0A0G2JMS6 1433 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 RECQL5O94762 991 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 ALDH1A1P00352 501 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 CDC25AP30304 524 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 ETFBP38117 255 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 KCNMA1Q12791 1236 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 STX4Q12846 297 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 OR7A2PQ8NGA2 310 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 MDM1Q8TC05 714 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 AFG1LQ8WV93 481 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 METTL5Q9NRN9 209 aaKnown RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 HAO1Q9UJM8 370 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 E9PCH4 1651 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 PTENP60484 403 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 FOXD4Q12950 439 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 NCOA4Q13772 614 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 EPHA7Q15375 998 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 LIN54Q6MZP7 749 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 OR6Y1Q8NGX8 325 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 LENG1Q96BZ8 264 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 VCPIP1Q96JH7 1222 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 MCEEQ96PE7 176 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 RRN3Q9NYV6 651 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 C1orf232A0A0U1RR37 186 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 WFS1O76024 890 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 CYBBP04839 570 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 CCT3P49368 545 aaKnown RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 ACLYP53396 1101 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 GNA13Q14344 377 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 ZCCHC11Q5TAX3 1644 aaKnown RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 TMEM2Q9UHN6 1383 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 IRGMA1A4Y4 181 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 PIK3CDO00329 1044 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 CHN2P52757 468 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 FRG1Q14331 258 aaKnown RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 PHKG1Q16816 387 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 SHROOM1Q2M3G4 852 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 ANKMY2Q8IV38 441 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 DLG5Q8TDM6 1919 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 RAD51BO15315 384 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 PIK3CGP48736 1102 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 SESN2P58004 480 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 GTF3C2Q8WUA4 911 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 KCTD14Q9BQ13 255 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-209ENST00000472056 KIFC1Q9BW19 673 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 IPPQ9Y573 584 aa13.73□□□□□ -0.21
COL6A3-209ENST00000472056 LDLRP01130 860 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 RUNDC3AQ59EK9 446 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 NEK5Q6P3R8 708 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 TRMT6Q9UJA5 497 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 HBS1LQ9Y450 684 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 F8W810 466 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 TRDMT1O14717 391 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 PDGFRBP09619 1106 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 ZCCHC18P0CG32 403 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 TPBGLP0DKB5 382 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 VPS72Q15906 364 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 ATP6AP1LQ52LC2 224 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 HAVCR1Q96D42 359 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 SH3GLB1Q9Y371 365 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 NR3C2P08235 984 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 MAPKAPK2P49137 400 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 RFX4Q33E94 735 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 PTRHD1Q6GMV3 140 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 PGM2Q96G03 612 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 LRRC40Q9H9A6 602 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 TRIM49D1C9J1S8 452 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 RBP3P10745 1247 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 RCVRNP35243 200 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 MCAMP43121 646 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 SPICE1Q8N0Z3 855 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 PLEKHA8P1O95397 391 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 CDH3P22223 829 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 CACNB1Q02641 598 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 SNX30Q5VWJ9 437 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 TTC30AQ86WT1 665 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 TTC30BQ8N4P2 665 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 LPAR1Q92633 364 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 DCLK3Q9C098 648 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 LSM7Q9UK45 103 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 CCDC130P13994 396 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 CRABP2P29373 138 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 NME3Q13232 169 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 MSLNQ13421 630 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 TMEM132DQ14C87 1099 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 RASSF5Q8WWW0 418 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 CCNB1IP1Q9NPC3 277 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 DYRK3O43781 588 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 POLR2EP19388 210 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 PLA2G4FQ68DD2 849 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 THOC7Q6I9Y2 204 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 PAIP1Q9H074 479 aaKnown RBP13.72□□□□□ -0.21
COL6A3-209ENST00000472056 NAGPAQ9UK23 515 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 INPP5FQ9Y2H2 1132 aa13.72□□□□□ -0.21
COL6A3-209ENST00000472056 CHD1O14646 1710 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 VPS26AO75436 327 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 RPL22P35268 128 aaKnown RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 EXOSC10Q01780 885 aaKnown RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 AGR3Q8TD06 166 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms