RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 JDP2Q8WYK2 163 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 RPL36ALQ969Q0 106 aaKnown RBP1.78□□□□□ -2.12
UBXN4-207ENST00000471246 SPSB4Q96A44 273 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 RSPRY1Q96DX4 576 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 SUCLG2Q96I99 432 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 QTRT1Q9BXR0 403 aaKnown RBP1.78□□□□□ -2.12
UBXN4-207ENST00000471246 FAM204AQ9H8W3 233 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 GBA2Q9HCG7 927 aaPredicted RBP1.78□□□□□ -2.12
UBXN4-207ENST00000471246 A1CFQ9NQ94 594 aaKnown RBP1.78□□□□□ -2.12
UBXN4-207ENST00000471246 C1orf112Q9NSG2 853 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 SACM1LQ9NTJ5 587 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 ASIC5Q9NY37 505 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 KLHL13Q9P2N7 655 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 DNMT3BQ9UBC3 853 aaKnown RBP1.78□□□□□ -2.12
UBXN4-207ENST00000471246 CPNE7Q9UBL6 633 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 AFF4Q9UHB7 1163 aaKnown RBP1.78□□□□□ -2.12
UBXN4-207ENST00000471246 DDX20Q9UHI6 824 aaKnown RBP1.78□□□□□ -2.12
UBXN4-207ENST00000471246 BTBD3Q9Y2F9 522 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 EID1Q9Y6B2 187 aa1.78□□□□□ -2.12
UBXN4-207ENST00000471246 LOC102723971A0A1B0GUV8 181 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 KCNU1A8MYU2 1149 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ISM1B1AKI9 464 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 E5RJQ4 531 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 UBE2Q2LH0YL09 131 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PYCARD-AS1I3L0S3 204 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PSMD9O00233 223 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 CES2O00748 559 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 TPP1O14773 563 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 CCP110O43303 1012 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PMPCBO75439 489 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 GCATO75600 419 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 BCAR3O75815 825 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 RASSF9O75901 435 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PIAS2O75928 621 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 RASAL1O95294 804 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 TOP3BO95985 862 aaKnown RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 FGAP02671 866 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 MYCLP12524 364 aaPredicted RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 HGFP14210 728 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 IL1R1P14778 569 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ACVR2AP27037 513 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 EPHA3P29320 983 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 UQCRC1P31930 480 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 GKP32189 559 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PTGER1P34995 402 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PTDSS1P48651 473 aaKnown RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ITGA8P53708 1063 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 CACNB3P54284 484 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 SUMO3P55854 103 aaPredicted RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 KRTAP10-12P60413 245 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 TIAL1Q01085 375 aaKnown RBP eCLIP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 LMAN2Q12907 356 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 CCNIQ14094 377 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ZNF268Q14587 947 aaPredicted RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 POLD3Q15054 466 aaPredicted RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 FAM187BQ17R55 369 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 INSCQ1MX18 579 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 TBC1D25Q3MII6 688 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ARHGAP29Q52LW3 1261 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 C3orf38Q5JPI3 329 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 C11orf87Q6NUJ2 197 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 MIS18BP1Q6P0N0 1132 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PTCHD4Q6ZW05 846 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 SFTPA1Q8IWL2 248 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 SIRT6Q8N6T7 355 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 LINC01465Q8N7H1 131 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 DENND1AQ8TEH3 1009 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 LRTOMTQ8WZ04 291 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PPP2R3CQ969Q6 453 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 NMD3Q96D46 503 aaKnown RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 WDYHV1Q96HA8 205 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ZC3H10Q96K80 434 aaKnown RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ZNF48Q96MX3 618 aaPredicted RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 EFHD1Q9BUP0 239 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 VN1R3Q9BXE9 311 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 STK31Q9BXU1 1019 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 LRRC27Q9C0I9 530 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 PRSS22Q9GZN4 317 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 XPNPEP3Q9NQH7 507 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 LPAR3Q9UBY5 353 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 MID2Q9UJV3 735 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 ZNF580Q9UK33 172 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 HDAC9Q9UKV0 1011 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 AMFRQ9UKV5 643 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 L1RE1Q9UN81 338 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 DRG1Q9Y295 367 aaKnown RBP1.77□□□□□ -2.13
UBXN4-207ENST00000471246 LRP12Q9Y561 859 aa1.77□□□□□ -2.13
UBXN4-207ENST00000471246 WDR17Q8IZU2 1322 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 ZNF521Q96K83 1311 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 TCRBV5S1A1TA0A578 114 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 VSTM5A8MXK1 200 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 BTBD19C9JJ37 291 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 TMEM232C9JQI7 657 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 M0R3H8 397 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 AGPSO00116 658 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 RAB27BO00194 218 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 SPRY2O43597 315 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 TSPAN6O43657 245 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 RGS10O43665 173 aa1.76□□□□□ -2.13
UBXN4-207ENST00000471246 MGEA5O60502 916 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms