RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ATP6V0A2Q9Y487 856 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 GPR45Q9Y5Y3 372 aa5.38□□□□□ -1.55
CCDC88A-210ENST00000468534 RASA4O43374 803 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 FRS3O43559 492 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 ATP6V1B1P15313 513 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 SMARCA1P28370 1054 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 STIP1P31948 543 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 ABCD1P33897 745 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 ATP6V1E1P36543 226 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 FOLR3P41439 243 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 PDE6CP51160 858 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 CSE1LP55060 971 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 ATP8B2P98198 1209 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 FAPQ12884 760 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 FOXF2Q12947 444 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 ATP2B3Q16720 1220 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 PAPD7Q5XG87 772 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 BTN2A1Q7KYR7 527 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 CPA6Q8N4T0 437 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 MGARPQ8TDB4 240 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 ADAMTS18Q8TE60 1221 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 NRG4Q8WWG1 115 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 TFAP2BQ92481 460 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 FBXL20Q96IG2 436 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 AIFM3Q96NN9 605 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 ASB2Q96Q27 587 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 GSDMAQ96QA5 445 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 CHCHD6Q9BRQ6 235 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 GTPBP4Q9BZE4 634 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 WDR12Q9GZL7 423 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 MYLK2Q9H1R3 596 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC12A5Q9H2X9 1139 aa5.37□□□□□ -1.55
CCDC88A-210ENST00000468534 RRN3P2A6NIE6 340 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 PLOD2O00469 737 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 DKC1O60832 514 aaKnown RBP eCLIP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 HAUS5O94927 633 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC4A1P02730 911 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 DNTTP04053 509 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 SFTPCP11686 197 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 RHCEP18577 417 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 BTF3P20290 206 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 PRPHP41219 470 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 CD86P42081 329 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 STAT1P42224 750 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 MAPK10P53779 464 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 RCAN1P53805 252 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 KRTAP10-11P60412 298 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 RHDQ02161 417 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 DMTNQ08495 405 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 EIF2B5Q13144 721 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 CLUL1Q15846 466 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 ABCB5Q2M3G0 1257 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 TMEM240Q5SV17 173 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 KAZNQ674X7 775 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 TATDN1Q6P1N9 297 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 ENOSF1Q7L5Y1 443 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 PEG10Q86TG7 708 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 GALNT13Q8IUC8 556 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 ANKRD18AQ8IVF6 992 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 SRRM1Q8IYB3 904 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 MYCT1Q8N699 235 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 DCBLD1Q8N8Z6 715 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 Q8NA96 180 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 TOR1AIP2Q8NFQ8 470 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 CENPIQ92674 756 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 UBXN10Q96LJ8 280 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 ADPGKQ9BRR6 497 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC29A3Q9BZD2 475 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 RPAP3Q9H6T3 665 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 WDR26Q9H7D7 661 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 C1orf112Q9NSG2 853 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 ABCF3Q9NUQ8 709 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 CGNQ9P2M7 1197 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 ARPP21Q9UBL0 812 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 TMEM98Q9Y2Y6 226 aa5.36□□□□□ -1.55
CCDC88A-210ENST00000468534 PIK3R4Q99570 1358 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 DNAJC9-AS1A6NH13 148 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 B4E171 279 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 B3GALNT1O75752 331 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 KIAA0754O94854 1291 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 AGFG2O95081 481 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 SNUPNO95149 360 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 ERBB2P04626 1255 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 SKILP12757 684 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 KRT10P13645 584 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 P4HA1P13674 534 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 RPS2P15880 293 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 AGXTP21549 392 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 SLC6A4P31645 630 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 PROK1P58294 105 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 FPGSQ05932 587 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 SRSF4Q08170 494 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 MRPL28Q13084 256 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 CD300EQ496F6 205 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 PREPLQ4J6C6 727 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 TSTD2Q5T7W7 516 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 UTP14CQ5TAP6 766 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 ZNF788Q6ZQV5 615 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 NEK10Q6ZWH5 1172 aa5.35□□□□□ -1.55
CCDC88A-210ENST00000468534 RSPH3Q86UC2 560 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms