RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 KIAA0895Q8NCT3 520 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 SCAMP5Q8TAC9 235 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 SDCBP2Q9H190 292 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 CFAP45Q9UL16 551 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 ACTN4O43707 911 aaKnown RBP22.36■■□□□ 1.17
COL9A3-207ENST00000467819 RHOBTB1O94844 696 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 VNN1O95497 513 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 C4BPAP04003 597 aaKnown RBP22.36■■□□□ 1.17
COL9A3-207ENST00000467819 SLFN14P0C7P3 912 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 SLC6A11P48066 632 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 LIMK1P53667 647 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 AP3M2P53677 418 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 SLC5A3P53794 718 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 CREB5Q02930 508 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 MESP2Q0VG99 397 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 TCEAL6Q6IPX3 200 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 ANO7Q6IWH7 933 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 PAQR9Q6ZVX9 377 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 TTC30AQ86WT1 665 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 PDZD8Q8NEN9 1154 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 DDX1Q92499 740 aaKnown RBP22.36■■□□□ 1.17
COL9A3-207ENST00000467819 TCEAL3Q969E4 200 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 PAGE5Q96GU1 130 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 TNIP3Q96KP6 325 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 DMAP1Q9NPF5 467 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-207ENST00000467819 VPS45Q9NRW7 570 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 CHORDC1Q9UHD1 332 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-207ENST00000467819 MMP17Q9ULZ9 603 aa22.36■■□□□ 1.17
COL9A3-207ENST00000467819 COCHO43405 550 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 AP1G2O75843 785 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 ADH1CP00326 375 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 ADH5P11766 374 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 DLG4P78352 724 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 KDSRQ06136 332 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 ORC1Q13415 861 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 KMT5BQ4FZB7 885 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 STPG1Q5TH74 334 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 RHBDF2Q6PJF5 856 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 ACOT1Q86TX2 421 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 C12orf40Q86WS4 652 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 KIAA1958Q8N8K9 716 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 OVCA2Q8WZ82 227 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 SMARCD1Q96GM5 515 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 PNKPQ96T60 521 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 DMAC2Q9NW81 257 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 RCOR1Q9UKL0 485 aa22.35■■□□□ 1.17
COL9A3-207ENST00000467819 APODP05090 189 aa22.34■■□□□ 1.17
COL9A3-207ENST00000467819 CLDN10P78369 228 aa22.34■■□□□ 1.17
COL9A3-207ENST00000467819 USP39Q53GS9 565 aaKnown RBP22.34■■□□□ 1.17
COL9A3-207ENST00000467819 HECTD3Q5T447 861 aa22.34■■□□□ 1.17
COL9A3-207ENST00000467819 KCTD10Q9H3F6 313 aa22.34■■□□□ 1.17
COL9A3-207ENST00000467819 CCSER2Q9H7U1 834 aa22.34■■□□□ 1.17
COL9A3-207ENST00000467819 KRT82Q9NSB4 513 aa22.34■■□□□ 1.17
COL9A3-207ENST00000467819 GMIPQ9P107 970 aa22.34■■□□□ 1.17
COL9A3-207ENST00000467819 A0A1B0GVL5 298 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 TNFRSF10BO14763 440 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 KAT7O95251 611 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 NR3C1P04150 777 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 P4HA1P13674 534 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 CCDC130P13994 396 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 TIE1P35590 1138 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 MRPS21P82921 87 aaKnown RBP22.33■■□□□ 1.17
COL9A3-207ENST00000467819 CRY1Q16526 586 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 LY6G5CQ5SRR4 150 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 SLC9A9Q8IVB4 645 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 FUKQ8N0W3 1084 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 ALLCQ8N6M5 410 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 ZFRQ96KR1 1074 aaKnown RBP22.33■■□□□ 1.17
COL9A3-207ENST00000467819 ARHGEF4Q9NR80 690 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 TBC1D14Q9P2M4 693 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 HMGXB4Q9UGU5 601 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 SH3BP1Q9Y3L3 701 aa22.33■■□□□ 1.17
COL9A3-207ENST00000467819 KMT2BQ9UMN6 2715 aaPredicted RBP22.33■■□□□ 1.16
COL9A3-207ENST00000467819 E2F8A0AVK6 867 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 BCLAF3A2AJT9 711 aaKnown RBP22.32■■□□□ 1.16
COL9A3-207ENST00000467819 KLF8O95600 359 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-207ENST00000467819 CAVIN2O95810 425 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 IRF1P10914 325 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 HNRNPLP14866 589 aaKnown RBP eCLIP22.32■■□□□ 1.16
COL9A3-207ENST00000467819 PFKFB1P16118 471 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 EIF2DP41214 584 aaKnown RBP22.32■■□□□ 1.16
COL9A3-207ENST00000467819 NDST1P52848 882 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 ZACNQ401N2 412 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 CEP135Q66GS9 1140 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 RNF43Q68DV7 783 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 SPOPLQ6IQ16 392 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 TMEM92Q6UXU6 159 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 RASSF3Q86WH2 238 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 TXNDC5Q8NBS9 432 aaKnown RBP22.32■■□□□ 1.16
COL9A3-207ENST00000467819 MDGA1Q8NFP4 955 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 CNOT6LQ96LI5 555 aaKnown RBP22.32■■□□□ 1.16
COL9A3-207ENST00000467819 ZDHHC4Q9NPG8 344 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.32■■□□□ 1.16
COL9A3-207ENST00000467819 FAM49BQ9NUQ9 324 aa22.32■■□□□ 1.16
COL9A3-207ENST00000467819 TNRC6BQ9UPQ9 1833 aaKnown RBP22.31■■□□□ 1.16
COL9A3-207ENST00000467819 CEP192Q8TEP8 1941 aa22.31■■□□□ 1.16
COL9A3-207ENST00000467819 PLXND1Q9Y4D7 1925 aa22.31■■□□□ 1.16
COL9A3-207ENST00000467819 PDXKO00764 312 aa22.31■■□□□ 1.16
COL9A3-207ENST00000467819 TM4SF5O14894 197 aa22.31■■□□□ 1.16
COL9A3-207ENST00000467819 BCKDHBP21953 392 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms