RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 DPEP3Q9H4B8 488 aa14.37□□□□□ -0.11
CHD3-207ENST00000466233 FAM124BQ9H5Z6 455 aaPredicted RBP14.37□□□□□ -0.11
CHD3-207ENST00000466233 PNPLA8Q9NP80 782 aa14.37□□□□□ -0.11
CHD3-207ENST00000466233 FOXD4L1Q9NU39 408 aa14.37□□□□□ -0.11
CHD3-207ENST00000466233 TMEM30AQ9NV96 361 aa14.37□□□□□ -0.11
CHD3-207ENST00000466233 TRAF3IP3Q9Y228 551 aa14.37□□□□□ -0.11
CHD3-207ENST00000466233 TPRP12270 2363 aaKnown RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 SPAG17Q6Q759 2223 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 HOXC11O43248 304 aaPredicted RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 KAT7O95251 611 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 APODP05090 189 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 MBL2P11226 248 aaPredicted RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 CHRM1P11229 460 aaPredicted RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 CACNA2D1P54289 1103 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 STK4Q13043 487 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 BIRC3Q13489 604 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 EOGTQ5NDL2 527 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 STPG1Q5TH74 334 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 PMS2CLQ68D20 193 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 NAIF1Q69YI7 327 aaPredicted RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 KLHDC10Q6PID8 442 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 PAQR9Q6ZVX9 377 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 TRMT11Q7Z4G4 463 aaKnown RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 FAM35AQ86V20 835 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 HSCBQ8IWL3 235 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 ZNF276Q8N554 614 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 FBXO32Q969P5 355 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 PAGE5Q96GU1 130 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 ZFRQ96KR1 1074 aaKnown RBP14.36□□□□□ -0.11
CHD3-207ENST00000466233 CNTNAP3BQ96NU0 1288 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 CNTNAP3Q9BZ76 1288 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 BLZF1Q9H2G9 400 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 EXOC1Q9NV70 894 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 CFAP97Q9P2B7 532 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 ACACBO00763 2458 aa14.36□□□□□ -0.11
CHD3-207ENST00000466233 FAM237AA0A1B0GTK4 181 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 COCHO43405 550 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 ACTN4O43707 911 aaKnown RBP14.35□□□□□ -0.11
CHD3-207ENST00000466233 CAVIN2O95810 425 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 ASS1P00966 412 aaKnown RBP14.35□□□□□ -0.11
CHD3-207ENST00000466233 HSP90AA1P07900 732 aaKnown RBP14.35□□□□□ -0.11
CHD3-207ENST00000466233 ADH5P11766 374 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 HOXC13P31276 330 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 HOXD12P35452 270 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 KIR2DL1P43626 348 aaPredicted RBP14.35□□□□□ -0.11
CHD3-207ENST00000466233 AFMP43652 599 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 SLC5A3P53794 718 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 SF3A2Q15428 464 aaKnown RBP14.35□□□□□ -0.11
CHD3-207ENST00000466233 ETFBKMTQ8IXQ9 262 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 FUKQ8N0W3 1084 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 KIAA0895Q8NCT3 520 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 PLEKHO2Q8TD55 490 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 KCNK16Q96T55 309 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 CYP3A43Q9HB55 503 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 POLMQ9NP87 494 aaPredicted RBP14.35□□□□□ -0.11
CHD3-207ENST00000466233 CYLDQ9NQC7 956 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 FRMD4BQ9Y2L6 1034 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 STARD13Q9Y3M8 1113 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 SPTBN2O15020 2390 aa14.35□□□□□ -0.11
CHD3-207ENST00000466233 HELZP42694 1942 aaKnown RBP14.35□□□□□ -0.11
CHD3-207ENST00000466233 CALUO43852 315 aaPredicted RBP14.34□□□□□ -0.11
CHD3-207ENST00000466233 VNN1O95497 513 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 ABL1P00519 1130 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 NR3C1P04150 777 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 PMLP29590 882 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 INCA1Q0VD86 236 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 KMT5BQ4FZB7 885 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 C2orf27AQ580R0 203 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 BTBD8Q5XKL5 378 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 HTR3DQ70Z44 454 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 SV2AQ7L0J3 742 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 PHTF2Q8N3S3 785 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 TTC39CQ8N584 583 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 IL17RCQ8NAC3 791 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 WHAMMQ8TF30 809 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 CCDC47Q96A33 483 aaKnown RBP14.34□□□□□ -0.11
CHD3-207ENST00000466233 HNRNPABQ99729 332 aaKnown RBP14.34□□□□□ -0.11
CHD3-207ENST00000466233 SMYD3Q9H7B4 428 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 ARHGEF4Q9NR80 690 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 TLR8Q9NR97 1041 aaKnown RBP14.34□□□□□ -0.11
CHD3-207ENST00000466233 SMPD4Q9NXE4 827 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 EVLQ9UI08 416 aaPredicted RBP14.34□□□□□ -0.11
CHD3-207ENST00000466233 HPSEQ9Y251 543 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 SH3BP1Q9Y3L3 701 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 EPG5Q9HCE0 2579 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 RALGAPA1Q6GYQ0 2036 aa14.34□□□□□ -0.11
CHD3-207ENST00000466233 CLDN5O00501 218 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 AP1G2O75843 785 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 CASP1P29466 404 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 P2RY2P41231 377 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 CASP4P49662 377 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 PSEN1P49768 467 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 CDH8P55286 799 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 GOLGA8FQ08AF8 430 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 GOLGA8DPQ0D2H9 430 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 LY6G5CQ5SRR4 150 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 DAB2IPQ5VWQ8 1189 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 RNF43Q68DV7 783 aa14.33□□□□□ -0.12
CHD3-207ENST00000466233 INTS8Q75QN2 995 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms