RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 SCAMP5Q8TAC9 235 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 MSANTD3Q96H12 275 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 FAM81BQ96LP2 452 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 OSBPL6Q9BZF3 934 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 HEBP1Q9NRV9 189 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 CHORDC1Q9UHD1 332 aaPredicted RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 CCL26Q9Y258 94 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 MRPS17Q9Y2R5 130 aaKnown RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 PCDHGA4Q9Y5G9 962 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 COL4A2P08572 1712 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 KIF26AQ9ULI4 1882 aaPredicted RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 HHLA1C9JL84 531 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 PI15O43692 258 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 PAEPP09466 180 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 VDRP11473 427 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 ACO1P21399 889 aaKnown RBP13.77□□□□□ -0.21
COL28A1-206ENST00000465339 SLC7A9P82251 487 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 MAN2A1Q16706 1144 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 SGO2Q562F6 1265 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 CCDC183Q5T5S1 534 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 C1orf228Q6PIY5 440 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 TMEM270Q6UE05 265 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 ZNF852Q6ZMS4 543 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 GBP6Q6ZN66 633 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 TPRG1Q6ZUI0 275 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 KIAA1958Q8N8K9 716 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 ANKRD52Q8NB46 1076 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 ENOX1Q8TC92 643 aaKnown RBP13.77□□□□□ -0.21
COL28A1-206ENST00000465339 SLC22A12Q96S37 553 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 INTS2Q9H0H0 1204 aaKnown RBP13.77□□□□□ -0.21
COL28A1-206ENST00000465339 C8orf33Q9H7E9 229 aaPredicted RBP13.77□□□□□ -0.21
COL28A1-206ENST00000465339 TLR8Q9NR97 1041 aaKnown RBP13.77□□□□□ -0.21
COL28A1-206ENST00000465339 GKN1Q9NS71 199 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 ANO10Q9NW15 660 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 ARHGAP26Q9UNA1 814 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 PCDHB4Q9Y5E5 795 aa13.77□□□□□ -0.21
COL28A1-206ENST00000465339 F5P12259 2224 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 MYO16Q9Y6X6 1858 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 NCAM2O15394 837 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 OLFM2O95897 454 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 OAS1P00973 400 aaKnown RBP13.76□□□□□ -0.21
COL28A1-206ENST00000465339 ZDHHC11BP0C7U3 371 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 CD19P15391 556 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 TUBP50607 506 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 KPNA1P52294 538 aaPredicted RBP13.76□□□□□ -0.21
COL28A1-206ENST00000465339 HECTD3Q5T447 861 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 RRAGAQ7L523 313 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 ENOSF1Q7L5Y1 443 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 ARHGEF19Q8IW93 802 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 PJA1Q8NG27 643 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 FAM83CQ9BQN1 747 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 RNF38Q9H0F5 515 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 IRF2BPLQ9H1B7 796 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 UBE2TQ9NPD8 197 aaPredicted RBP13.76□□□□□ -0.21
COL28A1-206ENST00000465339 HESX1Q9UBX0 185 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 RAPGEFL1Q9UHV5 662 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 CNTN6Q9UQ52 1028 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 SCML2Q9UQR0 700 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 MUC6Q6W4X9 2439 aa13.76□□□□□ -0.21
COL28A1-206ENST00000465339 FAM170BA6NMN3 283 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 EEF1GP26641 437 aaKnown RBP13.75□□□□□ -0.21
COL28A1-206ENST00000465339 MAGEA9P43362 315 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 KIF11P52732 1056 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 MFAP3P55082 362 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 MTF1Q14872 753 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 UBXN2BQ14CS0 331 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 PDGFRLQ15198 375 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 STILQ15468 1287 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 ZNF77Q15935 545 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 CNGA2Q16280 664 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 EXOC3L4Q17RC7 722 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 ITPRIPL2Q3MIP1 535 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 VWA3BQ502W6 1294 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 TRIM65Q6PJ69 517 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 RALGPS2Q86X27 583 aaPredicted RBP13.75□□□□□ -0.21
COL28A1-206ENST00000465339 DDX42Q86XP3 938 aaKnown RBP eCLIP13.75□□□□□ -0.21
COL28A1-206ENST00000465339 SH3RF2Q8TEC5 729 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 KAT5Q92993 513 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 ZFYVE19Q96K21 471 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 TUBGCP2Q9BSJ2 902 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 CRACR2AQ9BSW2 395 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 FOXQ1Q9C009 403 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 NDST4Q9H3R1 872 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 LTB4R2Q9NPC1 389 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 SAMSN1Q9NSI8 373 aaKnown RBP13.75□□□□□ -0.21
COL28A1-206ENST00000465339 GMIPQ9P107 970 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 TSPAN16Q9UKR8 245 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 PIAS3Q9Y6X2 628 aa13.75□□□□□ -0.21
COL28A1-206ENST00000465339 KCNJ18B7U540 433 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 RNF225M0QZC1 329 aaPredicted RBP13.74□□□□□ -0.21
COL28A1-206ENST00000465339 LEFTY2O00292 366 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 O00370 1275 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 MBL2P11226 248 aaPredicted RBP13.74□□□□□ -0.21
COL28A1-206ENST00000465339 SLC9A1P19634 815 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 CD72P21854 359 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 PON1P27169 355 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 BCAT1P54687 386 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 PTPN5P54829 565 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 AMPD2Q01433 879 aa13.74□□□□□ -0.21
COL28A1-206ENST00000465339 BST2Q10589 180 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms