RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PMS2CLQ68D20 193 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 RNF43Q68DV7 783 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 RHBDF2Q6PJF5 856 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 PAQR9Q6ZVX9 377 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 SCAMP5Q8TAC9 235 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 CNOT6LQ96LI5 555 aaKnown RBP17.1■□□□□ 0.33
COL7A1-204ENST00000462475 EDEM2Q9BV94 578 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 FAM13BQ9NYF5 915 aa17.1■□□□□ 0.33
COL7A1-204ENST00000462475 TNFRSF10BO14763 440 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 KLRC4O43908 158 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 RTN3O95197 1032 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 KAT7O95251 611 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 VNN1O95497 513 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 CAVIN2O95810 425 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 ADH1CP00326 375 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 ADH5P11766 374 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 PMLP29590 882 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 EIF2DP41214 584 aaKnown RBP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 SLC5A3P53794 718 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 MRPS21P82921 87 aaKnown RBP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 KDSRQ06136 332 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 NCOA4Q13772 614 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 CRY1Q16526 586 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 USP39Q53GS9 565 aaKnown RBP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 ZNF667Q5HYK9 610 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 TMEM92Q6UXU6 159 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 TTC30AQ86WT1 665 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 DDX42Q86XP3 938 aaKnown RBP eCLIP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 ALLCQ8N6M5 410 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 TXNDC5Q8NBS9 432 aaKnown RBP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 KIAA0895Q8NCT3 520 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 PDZD8Q8NEN9 1154 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 PARD3BQ8TEW8 1205 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 OVCA2Q8WZ82 227 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 SNX21Q969T3 373 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 PNKPQ96T60 521 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 MED10Q9BTT4 135 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 DMAP1Q9NPF5 467 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 ZDHHC4Q9NPG8 344 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 CHORDC1Q9UHD1 332 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-204ENST00000462475 ATP8B3O60423 1300 aa17.09■□□□□ 0.33
COL7A1-204ENST00000462475 KLF8O95600 359 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-204ENST00000462475 C4BPAP04003 597 aaKnown RBP17.08■□□□□ 0.32
COL7A1-204ENST00000462475 TIE1P35590 1138 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 DLG4P78352 724 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 CLDN10P78369 228 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 STK4Q13043 487 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 ORC1Q13415 861 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 PKP1Q13835 747 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 LY6G5CQ5SRR4 150 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 EMC10Q5UCC4 262 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 C11orf74Q86VG3 221 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 IL17RCQ8NAC3 791 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 GOLGA5Q8TBA6 731 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 SMARCD1Q96GM5 515 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 LSM14BQ9BX40 385 aaKnown RBP17.08■□□□□ 0.32
COL7A1-204ENST00000462475 CCSER2Q9H7U1 834 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 ARHGEF4Q9NR80 690 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 KRT82Q9NSB4 513 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 DMAC2Q9NW81 257 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 GMIPQ9P107 970 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 HMGXB4Q9UGU5 601 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 SERTAD1Q9UHV2 236 aa17.08■□□□□ 0.32
COL7A1-204ENST00000462475 USP24Q9UPU5 2620 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 E2F8A0AVK6 867 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 LNP1A1A4G5 178 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 SGK1O00141 431 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 ACTN4O43707 911 aaKnown RBP17.07■□□□□ 0.32
COL7A1-204ENST00000462475 KCNK5O95279 499 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 APODP05090 189 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 CCDC130P13994 396 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 KIR2DL1P43626 348 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-204ENST00000462475 ST3GAL2Q16842 350 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 HECTD3Q5T447 861 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 ACOT1Q86TX2 421 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 CEP57L1Q8IYX8 460 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 FUKQ8N0W3 1084 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 PHTF2Q8N3S3 785 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 ZMIZ2Q8NF64 920 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 OLIG1Q8TAK6 271 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 WBP2Q969T9 261 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 TNIP3Q96KP6 325 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 EXOC1Q9NV70 894 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 IL37Q9NZH6 218 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 TBC1D14Q9P2M4 693 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 ANGPTL2Q9UKU9 493 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 CEP295Q9C0D2 2601 aa17.07■□□□□ 0.32
COL7A1-204ENST00000462475 FAM92AA1XBS5 289 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 PATE3B3GLJ2 98 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 AP1G2O75843 785 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 SLFN14P0C7P3 912 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 ZDHHC11BP0C7U3 371 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 GRIA2P42262 883 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 PGFP49763 221 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 TUBP50607 506 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 AP3M2P53677 418 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 DNM1Q05193 864 aaKnown RBP17.06■□□□□ 0.32
COL7A1-204ENST00000462475 KMT5BQ4FZB7 885 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 SNX30Q5VWJ9 437 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 CYP2U1Q7Z449 544 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms