RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MAP7D3Q8IWC1 876 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 GALNT4Q8N4A0 578 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 CCDC33Q8N5R6 958 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 RNF148Q8N7C7 305 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 SLC44A1Q8WWI5 657 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ALKBH8Q96BT7 664 aaKnown RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 FAM81BQ96LP2 452 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 CSRNP1Q96S65 589 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ACSS2Q9NR19 701 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 SMYD2Q9NRG4 433 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PEX1O43933 1283 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 FKBP6O75344 327 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 IL1R2P27930 398 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 NPTX2P47972 431 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 RPL10AP62906 217 aaKnown RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 SLC18A2Q05940 514 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 GRM2Q14416 872 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 XKR9Q5GH70 373 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 SH3D19Q5HYK7 790 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 B3GNT6Q6ZMB0 384 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 CRLF3Q8IUI8 442 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ICA1LQ8NDH6 482 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 SLC35B2Q8TB61 432 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 AGR3Q8TD06 166 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 GPAMQ9HCL2 828 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 MRPL47Q9HD33 250 aaKnown RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 TMOD2Q9NZR1 351 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 POMPQ9Y244 141 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 DNAJC16Q9Y2G8 782 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PCDHGA4Q9Y5G9 962 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ABCA3Q99758 1704 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 HNRNPDLO14979 420 aaKnown RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 FOXD2O60548 495 aaPredicted RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ITGAVP06756 1048 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 F7P08709 466 aaPredicted RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 KCNA4P22459 653 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 YWHABP31946 246 aaKnown RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PLOD1Q02809 727 aaPredicted RBP12.18□□□□□ -0.46
CPSF3-202ENST00000460593 TEX44Q53QW1 395 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ZBTB41Q5SVQ8 909 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 C6orf52Q5T4I8 152 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 C1orf228Q6PIY5 440 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 TRIM67Q6ZTA4 783 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ABRAQ8N0Z2 381 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 EMC1Q8N766 993 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PPP1R14CQ8TAE6 165 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ACER1Q8TDN7 264 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PPP1R36Q96LQ0 422 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 MAN1C1Q9NR34 630 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 FBXO28Q9NVF7 368 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PLLPQ9Y342 182 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 DTNAQ9Y4J8 743 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 ADAMTSL1Q8N6G6 1762 aa12.18□□□□□ -0.46
CPSF3-202ENST00000460593 PCNTO95613 3336 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 ADCY3O60266 1144 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 NCF2P19878 526 aaPredicted RBP12.17□□□□□ -0.46
CPSF3-202ENST00000460593 ATP2B4P23634 1241 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 SLC5A2P31639 672 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 TDRD10Q5VZ19 366 aaKnown RBP12.17□□□□□ -0.46
CPSF3-202ENST00000460593 AMIGO2Q86SJ2 522 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 PHTF2Q8N3S3 785 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 TMEM161BQ8NDZ6 487 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 KCNH7Q9NS40 1196 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 PNPOQ9NVS9 261 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 NYAP2Q9P242 653 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 CDH22Q9UJ99 828 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 ZNF232Q9UNY5 417 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 TMEM191CA6NGB0 347 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 H3BNX3 289 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 TMEM191BP0C7N4 346 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 RGS2P41220 211 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 SP4Q02446 784 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 ABCB5Q2M3G0 1257 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 C12orf56Q8IXR9 622 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 UNC5BQ8IZJ1 945 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 NDUFAF2Q8N183 169 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 TTLL6Q8N841 843 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 GRIN3AQ8TCU5 1115 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 NKD2Q969F2 451 aaPredicted RBP12.17□□□□□ -0.46
CPSF3-202ENST00000460593 DCUN1D1Q96GG9 259 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 MRPL1Q9BYD6 325 aaKnown RBP12.17□□□□□ -0.46
CPSF3-202ENST00000460593 PARVAQ9NVD7 372 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 ZDHHC7Q9NXF8 308 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 PTTG2Q9NZH5 202 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 IP6K2Q9UHH9 426 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 DRG1Q9Y295 367 aaKnown RBP12.17□□□□□ -0.46
CPSF3-202ENST00000460593 TELO2Q9Y4R8 837 aa12.17□□□□□ -0.46
CPSF3-202ENST00000460593 SMIM31A0A1B0GVY4 71 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 ACO1P21399 889 aaKnown RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 FDFT1P37268 417 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 MMRN1Q13201 1228 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 DNAJC24Q6P3W2 148 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 TRMT10BQ6PF06 316 aaKnown RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 FRMD7Q6ZUT3 714 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 GAB3Q8WWW8 586 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 TMIGD2Q96BF3 282 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 MOCOSQ96EN8 888 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 TRIM11Q96F44 468 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 IFT122Q9HBG6 1241 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 KCND2Q9NZV8 630 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms