RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 APBB2Q92870 758 aa9.22□□□□□ -0.93
NIPBL-202ENST00000448238 CITED4Q96RK1 184 aa9.22□□□□□ -0.93
NIPBL-202ENST00000448238 MND1Q9BWT6 205 aa9.22□□□□□ -0.93
NIPBL-202ENST00000448238 MARCH7Q9H992 704 aa9.22□□□□□ -0.93
NIPBL-202ENST00000448238 SENP2Q9HC62 589 aa9.22□□□□□ -0.93
NIPBL-202ENST00000448238 FARSAQ9Y285 508 aaKnown RBP9.22□□□□□ -0.93
NIPBL-202ENST00000448238 GP5P40197 560 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 MAGEA4P43358 317 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 CACNB3P54284 484 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 USPL1Q5W0Q7 1092 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 SCAIQ8N9R8 606 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 NAT9Q9BTE0 207 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 GPR63Q9BZJ6 419 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 LRRC40Q9H9A6 602 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 PCMTD2Q9NV79 361 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 TLR7Q9NYK1 1049 aaKnown RBP9.21□□□□□ -0.93
NIPBL-202ENST00000448238 MED11Q9P086 117 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 PCDHA7Q9UN72 937 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 MYO3BQ8WXR4 1341 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 PLCH2O75038 1416 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 FAM172BPA6NC97 362 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 DSG3P32926 999 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 JAK3P52333 1124 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 SGO1Q5FBB7 561 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 CMTR2Q8IYT2 770 aaKnown RBP9.21□□□□□ -0.93
NIPBL-202ENST00000448238 NEDD1Q8NHV4 660 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 XAGE2Q96GT9 111 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 PHF8Q9UPP1 1060 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 C9orf84Q5VXU9 1444 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 IRGMA1A4Y4 181 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 PLEKHA8P1O95397 391 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 ASS1P00966 412 aaKnown RBP9.21□□□□□ -0.93
NIPBL-202ENST00000448238 GNA15P30679 374 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 SLC39A14Q15043 492 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 SLC15A2Q16348 729 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 DGKDQ16760 1214 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 PYDC2Q56P42 97 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 CYB5RLQ6IPT4 315 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 SCARA5Q6ZMJ2 495 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 PLCZ1Q86YW0 608 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 FAM20CQ8IXL6 584 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 DCPSQ96C86 337 aaKnown RBP9.21□□□□□ -0.93
NIPBL-202ENST00000448238 ERMAPQ96PL5 475 aaPredicted RBP9.21□□□□□ -0.93
NIPBL-202ENST00000448238 MMADHCQ9H3L0 296 aaPredicted RBP9.21□□□□□ -0.93
NIPBL-202ENST00000448238 GOLPH3Q9H4A6 298 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 INTS10Q9NVR2 710 aaKnown RBP9.21□□□□□ -0.93
NIPBL-202ENST00000448238 WDR35Q9P2L0 1181 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 AMACRQ9UHK6 382 aa9.21□□□□□ -0.93
NIPBL-202ENST00000448238 LOC100653049A0A140TA62 436 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 DENND3A2RUS2 1198 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 IGF2BP3O00425 579 aaKnown RBP eCLIP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 NR4A1P22736 598 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 ITGA6P23229 1130 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 MZF1P28698 734 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 USP38Q8NB14 1042 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 E2F7Q96AV8 911 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 MED15Q96RN5 788 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 C2orf40Q9H1Z8 148 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 CATSPERBQ9H7T0 1116 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 CUEDC1Q9NWM3 386 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF224Q9NZL3 707 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 RGS17Q9UGC6 210 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 PRKAG3Q9UGI9 489 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 RAPGEFL1Q9UHV5 662 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 MAFKO60675 156 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 TIPRLO75663 272 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 EIF4A2Q14240 407 aaKnown RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 PIGHQ14442 188 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 ARL6IP4Q66PJ3 421 aaKnown RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 NLRP10Q86W26 655 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 SLC38A2Q96QD8 506 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 ABCG2Q9UNQ0 655 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 SERPINA3P01011 423 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 CHN1P15882 459 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 PTX3P26022 381 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 PTPN7P35236 360 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 GRIK1P39086 918 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 VAC14Q08AM6 782 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 NME3Q13232 169 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 PLD1Q13393 1074 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 DDB1Q16531 1140 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 NAIF1Q69YI7 327 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 ADHFE1Q8IWW8 467 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF248Q8NDW4 579 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 BLOC1S5Q8TDH9 187 aa9.21□□□□□ -0.94
NIPBL-202ENST00000448238 JARID2Q92833 1246 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-202ENST00000448238 IQCMA0A1B0GVH7 501 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 GNG14A0A1W2PPG7 69 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 NUAK1O60285 661 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 TPST1O60507 370 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 HLA-DQA2P01906 255 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ATP5BP06576 529 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 HOXB6P17509 224 aaKnown RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ACADSBP45954 432 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 ACTR3P61158 418 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 LRRC74BQ6ZQY2 392 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 NEK7Q8TDX7 302 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PROX1Q92786 737 aa9.2□□□□□ -0.94
NIPBL-202ENST00000448238 MARCOQ9UEW3 520 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-202ENST00000448238 PCDHA4Q9UN74 947 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms