RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ZNF844Q08AG5 666 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF772Q68DY9 489 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 LPCAT2Q7L5N7 544 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 LRRC71Q8N4P6 559 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TMC2Q8TDI7 906 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF512Q96ME7 567 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 CATSPER2Q96P56 530 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 SIKE1Q9BRV8 207 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 DIP2CQ9Y2E4 1556 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 CES2O00748 559 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 FCHO1O14526 889 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 MAP3K6O95382 1288 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 VDRP11473 427 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ITGA4P13612 1032 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 GARTP22102 1010 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ETFBP38117 255 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 GLRBP48167 497 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TAF6P49848 677 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ST8SIA6P61647 398 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 GIT2Q14161 759 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ARMCX4Q5H9R4 360 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 GJC2Q5T442 439 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 MFSD14CQ5VZR4 134 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 EFCAB12Q6NXP0 572 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ACTL9Q8TC94 416 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 BTBD10Q9BSF8 475 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 PIDD1Q9HB75 910 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 CRLS1Q9UJA2 301 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ABT1Q9ULW3 272 aaKnown RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 KIAA1210Q9ULL0 1709 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 GPR75-ASB3A0A0A6YYF3 556 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 UBE2Q2LH0YL09 131 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 AKAP3O75969 853 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TCF3P15923 654 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 RXRBP28702 533 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 AVPR1AP37288 418 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ERVK-9P63128 1117 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 PLIN5Q00G26 463 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 MPP3Q13368 585 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ATP6AP1LQ52LC2 224 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 PCNX4Q63HM2 1172 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 STRA8Q7Z7C7 330 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 CENPLQ8N0S6 344 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 AENQ8WTP8 325 aaKnown RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 GPRASP2Q96D09 838 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 PGM2Q96G03 612 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TRAPPC9Q96Q05 1148 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 SH3GL1Q99961 368 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 CBWD1Q9BRT8 395 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TMEM79Q9BSE2 394 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 RMND5AQ9H871 391 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 RNF112Q9ULX5 631 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 DLC1Q96QB1 1528 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ZSCAN5CA6NGD5 496 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 VPS26AO75436 327 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 MGAT5Q09328 741 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 MYBPC2Q14324 1141 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TRIP4Q15650 581 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ARHGAP17Q68EM7 881 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 IRGCQ6NXR0 463 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 NUDT18Q6ZVK8 323 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 PACS2Q86VP3 889 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 FAM151AQ8WW52 585 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 CASP10Q92851 521 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TLR10Q9BXR5 811 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 WDCPQ9H6R7 721 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TCF7L2Q9NQB0 619 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 ERAP1Q9NZ08 941 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TNS3Q68CZ2 1445 aa8.02□□□□□ -1.12
NEDD9-204ENST00000448183 CNOT3O75175 753 aaKnown RBP8.02□□□□□ -1.13
NEDD9-204ENST00000448183 SASH3O75995 380 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 FSBPO95073 299 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 LSM8O95777 96 aaKnown RBP8.02□□□□□ -1.13
NEDD9-204ENST00000448183 F9P00740 461 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 SLC2A3P11169 496 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 ATP6V1B2P21281 511 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 FASP25445 335 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 HIST2H2ACQ16777 129 aaPredicted RBP8.02□□□□□ -1.13
NEDD9-204ENST00000448183 CYP51A1Q16850 503 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 AGKQ53H12 422 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 HIST2H2AA3Q6FI13 130 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 OTOAQ7RTW8 1153 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 FUKQ8N0W3 1084 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 OPTNQ96CV9 577 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 CYP4F12Q9HCS2 524 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 IARS2Q9NSE4 1012 aaKnown RBP8.02□□□□□ -1.13
NEDD9-204ENST00000448183 COPG2Q9UBF2 871 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 UBQLN1Q9UMX0 589 aaKnown RBP8.02□□□□□ -1.13
NEDD9-204ENST00000448183 CLCA2Q9UQC9 943 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 NR5A2O00482 541 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 UBDO15205 165 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 DYNC1LI2O43237 492 aaPredicted RBP8.02□□□□□ -1.13
NEDD9-204ENST00000448183 MAP3K13O43283 966 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 TNFAIP8O95379 198 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 BCL10O95999 233 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 PPP4CP60510 307 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 PPIDQ08752 370 aaKnown RBP8.02□□□□□ -1.13
NEDD9-204ENST00000448183 BMPR2Q13873 1038 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 TBCELQ5QJ74 424 aa8.02□□□□□ -1.13
NEDD9-204ENST00000448183 TTC30AQ86WT1 665 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms