RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 KLHL14Q9P2G3 628 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 COL1A2P08123 1366 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 SIGLEC16A6NMB1 481 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 M0QYV0 167 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 MED7O43513 233 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 KRT7P08729 469 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 CTSHP09668 335 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 TAC1P20366 129 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 CA4P22748 312 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 RAD23BP54727 409 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 NRLP54845 237 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 GJA9P57773 515 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 SLC25A11Q02978 314 aaKnown RBP11.16□□□□□ -0.62
CUX1-205ENST00000425244 CGB2Q6NT52 195 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 NIPA2Q8N8Q9 360 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 C1orf127Q8N9H9 656 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 SLC35B2Q8TB61 432 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 TBC1D31Q96DN5 1066 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 EURLQ9NYK6 297 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 SIX4Q9UIU6 781 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 SHOC2Q9UQ13 582 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 Q9Y3F1 56 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 PTCH2Q9Y6C5 1203 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 C3orf70A6NLC5 250 aaPredicted RBP11.16□□□□□ -0.62
CUX1-205ENST00000425244 KDELR1P24390 212 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 SSTR1P30872 391 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 CDH5P33151 784 aaPredicted RBP11.16□□□□□ -0.62
CUX1-205ENST00000425244 RPA3P35244 121 aaPredicted RBP11.16□□□□□ -0.62
CUX1-205ENST00000425244 MYO1EQ12965 1108 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 BIRC2Q13490 618 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 C11orf91Q3C1V1 193 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 BBS9Q3SYG4 887 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 JADE1Q6IE81 842 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 RPAINQ86UA6 219 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 RIBC1Q8N443 379 aaPredicted RBP11.16□□□□□ -0.62
CUX1-205ENST00000425244 FAM71DQ8N9W8 422 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 UBA3Q8TBC4 463 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 PYROXD1Q8WU10 500 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 MTG1Q9BT17 334 aaPredicted RBP11.16□□□□□ -0.62
CUX1-205ENST00000425244 FZD8Q9H461 694 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 RNF19AQ9NV58 838 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 ACTL7BQ9Y614 415 aa11.16□□□□□ -0.62
CUX1-205ENST00000425244 A0A1W2PPM1 405 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 LACTBL1A8MY62 500 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 ALOX15BO15296 676 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 B4GALT4O60513 344 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 STAG3L1P0CL83 205 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 ARF4P18085 180 aaPredicted RBP11.15□□□□□ -0.62
CUX1-205ENST00000425244 PROZP22891 400 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 CALRP27797 417 aaKnown RBP11.15□□□□□ -0.62
CUX1-205ENST00000425244 NCALDP61601 193 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 BASP1P80723 227 aaKnown RBP11.15□□□□□ -0.62
CUX1-205ENST00000425244 MSS51Q4VC12 460 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 FNBP1LQ5T0N5 605 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 FAM102AQ5T9C2 384 aaPredicted RBP11.15□□□□□ -0.62
CUX1-205ENST00000425244 POLNQ7Z5Q5 900 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 FAM228AQ86W67 206 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 XYLT1Q86Y38 959 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 FITM2Q8N6M3 262 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 LINC01465Q8N7H1 131 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 HEXIM2Q96MH2 286 aaKnown RBP11.15□□□□□ -0.62
CUX1-205ENST00000425244 ELOVL4Q9GZR5 314 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 PTPRHQ9HD43 1115 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 SLCO1B3Q9NPD5 702 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 STK38LQ9Y2H1 464 aa11.15□□□□□ -0.62
CUX1-205ENST00000425244 ADAMTS4O75173 837 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 GRAP2O75791 330 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 MICAL2O94851 1124 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 MIPP30301 263 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 GRK4P32298 578 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 PTPN7P35236 360 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 ARL4CP56559 192 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 PTPN11Q06124 597 aaPredicted RBP11.15□□□□□ -0.63
CUX1-205ENST00000425244 NR1H3Q13133 447 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 IRF5Q13568 498 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 SPARCL1Q14515 664 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 MTFR1Q15390 333 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 CDO1Q16878 200 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 GDF6Q6KF10 455 aaPredicted RBP11.15□□□□□ -0.63
CUX1-205ENST00000425244 CATSPER4Q7RTX7 472 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 UNC45BQ8IWX7 931 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 PPIL6Q8IXY8 311 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 CPT1BQ92523 772 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 KLHL29Q96CT2 875 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 ADPGKQ9BRR6 497 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 PRMT7Q9NVM4 692 aaPredicted RBP11.15□□□□□ -0.63
CUX1-205ENST00000425244 TRIM33Q9UPN9 1127 aa11.15□□□□□ -0.63
CUX1-205ENST00000425244 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.15□□□□□ -0.63
CUX1-205ENST00000425244 SIP14410 1827 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 TCRBV7S3A2A0A539 114 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 GOLGA8RI6L899 631 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 HAS3O00219 553 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 RNF8O76064 485 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 ATP6V1G2O95670 118 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 RPL22P35268 128 aaKnown RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 GPX6P59796 221 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 EIF3EP60228 445 aaKnown RBP11.14□□□□□ -0.63
CUX1-205ENST00000425244 MMRN1Q13201 1228 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 SH3PXD2AQ5TCZ1 1133 aa11.14□□□□□ -0.63
CUX1-205ENST00000425244 HHATQ5VTY9 493 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms