RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CYLC2Q14093 348 aaPredicted RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 MYLK3Q32MK0 819 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 ANGEL2Q5VTE6 544 aaKnown RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 KBTBD6Q86V97 674 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 SLC26A11Q86WA9 606 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 NUDCD3Q8IVD9 361 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 DIS3LQ8TF46 1054 aaKnown RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 CLMNQ96JQ2 1002 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 NLRP4Q96MN2 994 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 DDX56Q9NY93 547 aaKnown RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 PLK2Q9NYY3 685 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 PCDHGB4Q9UN71 923 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 DMTF1Q9Y222 760 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 LZTS1Q9Y250 596 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 INPP5FQ9Y2H2 1132 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 PCDHGB5Q9Y5G0 923 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 ASTN2O75129 1339 aaPredicted RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 DNAJA2O60884 412 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 RFPL1O75677 317 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 WEE2P0C1S8 567 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 PCSK6P29122 969 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 PMLP29590 882 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 L1CAMP32004 1257 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 SCNN1DP51172 638 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 DYNLT1P63172 113 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 DBN1Q16643 649 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 RC3H1Q5TC82 1133 aaKnown RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 SPOPLQ6IQ16 392 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 TMEM179Q6ZVK1 233 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 UNC45BQ8IWX7 931 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 POU5F2Q8N7G0 328 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 CCDC124Q96CT7 223 aaKnown RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 ZFRQ96KR1 1074 aaKnown RBP11.13□□□□□ -0.63
USP54-204ENST00000422491 MCEEQ96PE7 176 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 PNPLA8Q9NP80 782 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 ITGA11Q9UKX5 1188 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 TELO2Q9Y4R8 837 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 GNPATO15228 680 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 SERPINB6P35237 376 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 COPAP53621 1224 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 IRX4P78413 519 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 ENPEPQ07075 957 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 GRAMD1BQ3KR37 738 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 BRDTQ58F21 947 aaPredicted RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 C1QTNF12Q5T7M4 302 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 TATDN1Q6P1N9 297 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 LRRC43Q8N309 656 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 TTC13Q8NBP0 860 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 RSAD2Q8WXG1 361 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 MRPS26Q9BYN8 205 aaKnown RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 GRIP2Q9C0E4 1043 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 ZNF180Q9UJW8 692 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 EFR3BQ9Y2G0 817 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 DTNAQ9Y4J8 743 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 TTLL3Q9Y4R7 772 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 DDTLA6NHG4 134 aaPredicted RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 DHX15O43143 795 aaKnown RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 SPAG6O75602 509 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 PROCP04070 461 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 BPGMP07738 259 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 SNRPAP09012 282 aaKnown RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 ITGB5P18084 799 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 YWHABP31946 246 aaKnown RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 MAGEA10P43363 369 aaPredicted RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 YWHAGP61981 247 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP54-204ENST00000422491 BASP1P80723 227 aaKnown RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 SPP2Q13103 211 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 DCTN2Q13561 401 aaKnown RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 TMEM270Q6UE05 265 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 DENND5BQ6ZUT9 1274 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 RTKN2Q8IZC4 609 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 CCDC33Q8N5R6 958 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 HIPK4Q8NE63 616 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 DCUN1D1Q96GG9 259 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 MAML3Q96JK9 1138 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 ZNF778Q96MU6 729 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 MXRA8Q9BRK3 442 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 FRMD8P1Q9BZ68 369 aaPredicted RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 ZNF696Q9H7X3 374 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 RGPD3A6NKT7 1758 aaPredicted RBP11.12□□□□□ -0.63
USP54-204ENST00000422491 RGPD4Q7Z3J3 1758 aa11.12□□□□□ -0.63
USP54-204ENST00000422491 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 CCDC160A6NGH7 325 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CXorf49A8MYA2 514 aaPredicted RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 CST8O60676 142 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 KRT37O76014 449 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 LYPLA2O95372 231 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 GDF11O95390 407 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 HLA-DRAP01903 254 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 SLC5A2P31639 672 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ALDH1A3P47895 512 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 QARSP47897 775 aaKnown RBP11.11□□□□□ -0.63
USP54-204ENST00000422491 NPTX2P47972 431 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 GALK1P51570 392 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CLCN2P51788 898 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 CLDN10P78369 228 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 TMEM62Q0P6H9 643 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 APOFQ13790 326 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 USP41Q3LFD5 358 aa11.11□□□□□ -0.63
USP54-204ENST00000422491 ZACNQ401N2 412 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms