RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 RNF169Q8NCN4 708 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 SENP8Q96LD8 212 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 PWWP2AQ96N64 755 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 NCAPGQ9BPX3 1015 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 OSBPL7Q9BZF2 842 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 PCDH9Q9HC56 1237 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 APOC4-APOC2K7ER74 178 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 APOC2P02655 101 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 FAM163BP0C2L3 166 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 PTPN1P18031 435 aaKnown RBP21.65■■□□□ 1.06
USP39-203ENST00000409470 CLCNKBP51801 687 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 SLC26A9Q7LBE3 791 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 HNRNPABQ99729 332 aaKnown RBP21.65■■□□□ 1.06
USP39-203ENST00000409470 TPX2Q9ULW0 747 aaKnown RBP21.65■■□□□ 1.06
USP39-203ENST00000409470 DNAH12Q6ZR08 3092 aa21.65■■□□□ 1.06
USP39-203ENST00000409470 XPO1O14980 1071 aaKnown RBP21.64■■□□□ 1.05
USP39-203ENST00000409470 RPL34P49207 117 aaKnown RBP21.64■■□□□ 1.05
USP39-203ENST00000409470 MAGOHP61326 146 aaKnown RBP21.64■■□□□ 1.05
USP39-203ENST00000409470 DPYSL3Q14195 570 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 ZSCAN26Q16670 478 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 DSTYKQ6XUX3 929 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 FUKQ8N0W3 1084 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.64■■□□□ 1.05
USP39-203ENST00000409470 RSAD2Q8WXG1 361 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 MED10Q9BTT4 135 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 ADAM7Q9H2U9 754 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 GPATCH2LQ9NWQ4 482 aa21.64■■□□□ 1.05
USP39-203ENST00000409470 DDX43Q9NXZ2 648 aaKnown RBP21.64■■□□□ 1.05
USP39-203ENST00000409470 CLDN5O00501 218 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 MCF2LO15068 1137 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 ENDOD1O94919 500 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 SCNN1AP37088 669 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 EIF3EP60228 445 aaKnown RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 ITGA7Q13683 1181 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 TFDP2Q14188 446 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 PDK2Q15119 407 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 CCDC142Q17RM4 750 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 C6orf118Q5T5N4 469 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 LRRC31Q6UY01 552 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 CEP128Q6ZU80 1094 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 MRPL10Q7Z7H8 261 aaKnown RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 RNF180Q86T96 592 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 PIGZQ86VD9 579 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 TEKT4Q8WW24 435 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 CAPNS2Q96L46 248 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 TBCBQ99426 244 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 DUSP16Q9BY84 665 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 FOXP3Q9BZS1 431 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 C10orf88Q9H8K7 445 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 TRMT13Q9NUP7 481 aaKnown RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 CASTOR2A6NHX0 329 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 GABRDO14764 452 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 RGS16O15492 202 aaPredicted RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 TTC4O95801 387 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 PECAM1P16284 738 aaPredicted RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 PTPN9P43378 593 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 RAB27AP51159 221 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 ZC3H12AQ5D1E8 599 aaKnown RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 MDH1BQ5I0G3 518 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 ZCCHC9Q8N567 271 aaKnown RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 TMEM109Q9BVC6 243 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 SRRDQ9UH36 339 aa21.63■■□□□ 1.05
USP39-203ENST00000409470 DDX20Q9UHI6 824 aaKnown RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.63■■□□□ 1.05
USP39-203ENST00000409470 DCDC2CA8MYV0 355 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 NDC80O14777 642 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 MGEA5O60502 916 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 HOXD10P28358 340 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 CDR1P51861 262 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 HDAC4P56524 1084 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 PTK7Q13308 1070 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 LPIN1Q14693 890 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 KYNUQ16719 465 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 SPATA18Q8TC71 538 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 EPS8L3Q8TE67 593 aaKnown RBP21.62■■□□□ 1.05
USP39-203ENST00000409470 PGM2Q96G03 612 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 SNRNP25Q9BV90 132 aaKnown RBP21.62■■□□□ 1.05
USP39-203ENST00000409470 RASGRF2O14827 1237 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 EIF3HO15372 352 aaKnown RBP eCLIP21.62■■□□□ 1.05
USP39-203ENST00000409470 NPR3P17342 541 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 TFE3P19532 575 aaPredicted RBP21.62■■□□□ 1.05
USP39-203ENST00000409470 RPL9P32969 192 aaKnown RBP21.62■■□□□ 1.05
USP39-203ENST00000409470 SLCO1A2P46721 670 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 LHX1P48742 406 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 PPP2R2AP63151 447 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 GUCY1A3Q02108 690 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 ADIGQ0VDE8 80 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 EFHC1Q5JVL4 640 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 ARCQ7LC44 396 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 TMEM86AQ8N2M4 240 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 P3H4Q92791 437 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 TLCD1Q96CP7 247 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 RNF157Q96PX1 679 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 RBM15Q96T37 977 aaKnown RBP eCLIP21.62■■□□□ 1.05
USP39-203ENST00000409470 NINJ2Q9NZG7 142 aa21.62■■□□□ 1.05
USP39-203ENST00000409470 TIMM13Q9Y5L4 95 aaPredicted RBP21.62■■□□□ 1.05
USP39-203ENST00000409470 ZNF623O75123 536 aa21.61■■□□□ 1.05
USP39-203ENST00000409470 CAPN15O75808 1086 aa21.61■■□□□ 1.05
USP39-203ENST00000409470 GDF10P55107 478 aa21.61■■□□□ 1.05
USP39-203ENST00000409470 MORF4L2Q15014 288 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms