RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 LMCD1Q9NZU5 365 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 CDH9Q9ULB4 789 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 DERAQ9Y315 318 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 MRPL42Q9Y6G3 142 aaKnown RBP9.47□□□□□ -0.89
LIG4-202ENST00000405925 BRWD3Q6RI45 1802 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 DNAJC25-GNG10A0A024R161 153 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 WDR91A4D1P6 747 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 NR1D1P20393 614 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 MIPP30301 263 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 TUFMP49411 452 aaKnown RBP9.46□□□□□ -0.89
LIG4-202ENST00000405925 IL9RQ01113 521 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 CDH18Q13634 790 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 PDK2Q15119 407 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 CCDC6Q16204 474 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 PPP1R26Q5T8A7 1209 aaPredicted RBP9.46□□□□□ -0.89
LIG4-202ENST00000405925 ZDHHC17Q8IUH5 632 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 DCLK2Q8N568 766 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 ANKRD52Q8NB46 1076 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 MYLPFQ96A32 169 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 ADAM33Q9BZ11 813 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 RASA4BC9J798 803 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 F5H5T6 163 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 RASA4O43374 803 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 PYGMP11217 842 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 ITIH2P19823 946 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 CCR1P32246 355 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 CYP2C18P33260 490 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 AVPR1AP37288 418 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 FNTAP49354 379 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 LLGL2Q6P1M3 1020 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 MFSD7Q6UXD7 560 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 FAM228AQ86W67 206 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 MMGT1Q8N4V1 131 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 FIBCD1Q8N539 461 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 HSFY1Q96LI6 401 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 MAGEB5Q9BZ81 275 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 UNC93B1Q9H1C4 597 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.46□□□□□ -0.89
LIG4-202ENST00000405925 DMGDHQ9UI17 866 aaKnown RBP9.46□□□□□ -0.89
LIG4-202ENST00000405925 NEU2Q9Y3R4 380 aa9.46□□□□□ -0.89
LIG4-202ENST00000405925 ARVCFO00192 962 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 KRT38O76015 456 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 FGFR1P11362 822 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 CCL5P13501 91 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 CTNNB1P35222 781 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 GGCXP38435 758 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 CLCNKBP51801 687 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 GJA9P57773 515 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 SDHAF4Q5VUM1 108 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 CCNI2Q6ZMN8 369 aaPredicted RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 DENND5BQ6ZUT9 1274 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 B4GALNT4Q76KP1 1039 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 MYLK4Q86YV6 388 aaPredicted RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 IPMKQ8NFU5 416 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 HTATIP2Q9BUP3 242 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 TPX2Q9ULW0 747 aaKnown RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 TIAM2Q8IVF5 1701 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 CCDC85CA6NKD9 419 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 PPP1R37O75864 691 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 ITGA8P53708 1063 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 RPL7AP62424 266 aaKnown RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 ZNF177Q13360 481 aaPredicted RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 MAMLD1Q13495 774 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 TARBP2Q15633 366 aaKnown RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 MAP7D1Q3KQU3 841 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 RAB3IL1Q8TBN0 382 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 TFB1MQ8WVM0 346 aaKnown RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 SNX27Q96L92 541 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 TMEM121Q9BTD3 319 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 RNF39Q9H2S5 420 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 APOBEC3GQ9HC16 384 aaKnown RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 MRPL17Q9NRX2 175 aaKnown RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 XPO7Q9UIA9 1087 aaKnown RBP9.46□□□□□ -0.9
LIG4-202ENST00000405925 SLC27A5Q9Y2P5 690 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 PCDHGC5Q9Y5F6 944 aa9.46□□□□□ -0.9
LIG4-202ENST00000405925 A0A087WUV0 522 aaPredicted RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 ARL5CA6NH57 179 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 H0Y626 953 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 PIGRP01833 764 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 HOXD13P35453 343 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 TWF1Q12792 350 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 KLHL38Q2WGJ6 581 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 SLC39A4Q6P5W5 647 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 FAM183BPQ6ZVS7 135 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 LRRC43Q8N309 656 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 TOP6BLQ8N6T0 577 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 EFHBQ8N7U6 833 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 RAPGEF5Q92565 580 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 PCDHB18PQ96TA0 734 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 R3HDMLQ9H3Y0 253 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 POPDC2Q9HBU9 364 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 PGAP2Q9UHJ9 254 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 CHMP2BQ9UQN3 213 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 PMPCBO75439 489 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 OR4Q2P0C623 313 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 STIP1P31948 543 aaKnown RBP9.45□□□□□ -0.9
LIG4-202ENST00000405925 TBX4P57082 545 aa9.45□□□□□ -0.9
LIG4-202ENST00000405925 LILRA4P59901 499 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms