RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 ZFYVE19Q96K21 471 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 HEXIM2Q96MH2 286 aaKnown RBP15.4■□□□□ 0.06
SEC13-208ENST00000397109 SLC22A12Q96S37 553 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 FAM83CQ9BQN1 747 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 PNPLA8Q9NP80 782 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 NDRG2Q9UN36 371 aaKnown RBP15.4■□□□□ 0.06
SEC13-208ENST00000397109 FAM92AA1XBS5 289 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 SHISA7A6NL88 538 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 SLC7A9P82251 487 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 AMPD2Q01433 879 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 USP4Q13107 963 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 CUL2Q13617 745 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 RUNX3Q13761 415 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 MTF1Q14872 753 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 ZNF77Q15935 545 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 ZNF394Q53GI3 561 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 SNX30Q5VWJ9 437 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 C1orf210Q8IVY1 113 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 TRIM59Q8IWR1 403 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 ZMIZ2Q8NF64 920 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 SCAMP5Q8TAC9 235 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 ENOX1Q8TC92 643 aaKnown RBP15.4■□□□□ 0.06
SEC13-208ENST00000397109 SH3RF2Q8TEC5 729 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 NT5C1BQ96P26 610 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 IER2Q9BTL4 223 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 GTSE1Q9NYZ3 720 aa15.4■□□□□ 0.06
SEC13-208ENST00000397109 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.4■□□□□ 0.06
SEC13-208ENST00000397109 COL4A2P08572 1712 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 SPECC1L-ADORA2AF8WAN1 911 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 BEST1O76090 585 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 OAS1P00973 400 aaKnown RBP15.39■□□□□ 0.05
SEC13-208ENST00000397109 CDC25BP30305 580 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 CTHP32929 405 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 IFNAR2P48551 515 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 RAD23BP54727 409 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 TNK2Q07912 1038 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 KCNH2Q12809 1159 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 CLEC20AQ6ZU45 233 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 ZSCAN30Q86W11 494 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 ZNF687Q8N1G0 1237 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 SLC4A11Q8NBS3 891 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 ARID3AQ99856 593 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 DUSP16Q9BY84 665 aa15.39■□□□□ 0.05
SEC13-208ENST00000397109 CHORDC1Q9UHD1 332 aaPredicted RBP15.39■□□□□ 0.05
SEC13-208ENST00000397109 KIF26AQ9ULI4 1882 aaPredicted RBP15.38■□□□□ 0.05
SEC13-208ENST00000397109 ESPNB1AK53 854 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 OLFM2O95897 454 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 AFPP02771 609 aaKnown RBP15.38■□□□□ 0.05
SEC13-208ENST00000397109 TUBP50607 506 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 FZD5Q13467 585 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 LRRC32Q14392 662 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 HECTD3Q5T447 861 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 PPP1R26Q5T8A7 1209 aaPredicted RBP15.38■□□□□ 0.05
SEC13-208ENST00000397109 ARHGAP17Q68EM7 881 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 DDX42Q86XP3 938 aaKnown RBP eCLIP15.38■□□□□ 0.05
SEC13-208ENST00000397109 DHX40Q8IX18 779 aaKnown RBP15.38■□□□□ 0.05
SEC13-208ENST00000397109 OSCP1Q8WVF1 389 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 EXOC4Q96A65 974 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 LMAN1LQ9HAT1 526 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 HPS4Q9NQG7 708 aa15.38■□□□□ 0.05
SEC13-208ENST00000397109 TLR8Q9NR97 1041 aaKnown RBP15.38■□□□□ 0.05
SEC13-208ENST00000397109 SPATA6Q9NWH7 488 aaPredicted RBP15.38■□□□□ 0.05
SEC13-208ENST00000397109 DUS2Q9NX74 493 aaKnown RBP15.38■□□□□ 0.05
SEC13-208ENST00000397109 LAMTOR5O43504 91 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 ZDHHC11BP0C7U3 371 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 SOX9P48436 509 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 SLC8A3P57103 927 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 MYL5Q02045 173 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 LRMPQ12912 555 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 NR1H3Q13133 447 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 TPD52L1Q16890 204 aaPredicted RBP15.37■□□□□ 0.05
SEC13-208ENST00000397109 CPA6Q8N4T0 437 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 TTC16Q8NEE8 873 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 TTC8Q8TAM2 541 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 RIN3Q8TB24 985 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 ATP2A3Q93084 1043 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 MRFAP1L1Q96HT8 127 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 UBXN6Q9BZV1 441 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 RNF38Q9H0F5 515 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 CHRDQ9H2X0 955 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 EBF3Q9H4W6 596 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 GMIPQ9P107 970 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 KIAA1257Q9ULG3 409 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 SCML2Q9UQR0 700 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 CPQQ9Y646 472 aa15.37■□□□□ 0.05
SEC13-208ENST00000397109 COL4A3Q01955 1670 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 HHLA1C9JL84 531 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 LEFTY2O00292 366 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 SLC9A3R1O14745 358 aaPredicted RBP15.36■□□□□ 0.05
SEC13-208ENST00000397109 MBL2P11226 248 aaPredicted RBP15.36■□□□□ 0.05
SEC13-208ENST00000397109 CHRNB1P11230 501 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 ACO1P21399 889 aaKnown RBP15.36■□□□□ 0.05
SEC13-208ENST00000397109 HOXD11P31277 338 aaPredicted RBP15.36■□□□□ 0.05
SEC13-208ENST00000397109 NCAPHQ15003 741 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 DGKKQ5KSL6 1271 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 TRIM68Q6AZZ1 485 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 MAMSTRQ6ZN01 415 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 PPM1KQ8N3J5 372 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 ANKRD52Q8NB46 1076 aa15.36■□□□□ 0.05
SEC13-208ENST00000397109 EHBP1Q8NDI1 1231 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms