RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GLI1P08151 1106 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 RALBP11234 206 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ADARP55265 1226 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 RASA2Q15283 850 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 AARS2Q5JTZ9 985 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 WASHC2DQ5SRD0 308 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 FAM180AQ6UWF9 173 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 SGF29Q96ES7 293 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 AGBL1Q96MI9 1066 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 R3HDM2Q9Y2K5 976 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ABCA6Q8N139 1617 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 HMGB3O15347 200 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 STX7O15400 261 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ATP6V1G2O95670 118 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 MYBPC2Q14324 1141 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 SEL1L3Q68CR1 1132 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 UNC45BQ8IWX7 931 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 CAPSLQ8WWF8 208 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ABHD8Q96I13 439 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 KATNAL1Q9BW62 490 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 LRRC40Q9H9A6 602 aa10.6□□□□□ -0.71
LIMCH1-203ENST00000396595 ZCCHC18P0CG32 403 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 TCF3P15923 654 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 EPHB2P29323 1055 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 SOX11P35716 441 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 OTUD4Q01804 1114 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 CHRNB3Q05901 458 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 MTDHQ86UE4 582 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 DCP1BQ8IZD4 617 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 TMC2Q8TDI7 906 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ACSF2Q96CM8 615 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 B3GALT6Q96L58 329 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 KLHL4Q9C0H6 718 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 IMPAD1Q9NX62 359 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 DNAJC16Q9Y2G8 782 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 CES2O00748 559 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 TRIM24O15164 1050 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 OGTO15294 1046 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 SUPT7LO94864 414 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 GARTP22102 1010 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 AQP5P55064 265 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ARPC4P59998 168 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 MRNIPQ6NTE8 343 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ZNF571Q7Z3V5 609 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 TTC30BQ8N4P2 665 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ATXN2LQ8WWM7 1075 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 NARS2Q96I59 477 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 TMEM120AQ9BXJ8 343 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 TUBGCP4Q9UGJ1 667 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 MED24O75448 989 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 CHRM3P20309 590 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 PEX5P50542 639 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 UGT3A1Q6NUS8 523 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 STKLD1Q8NE28 680 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 FAM81AQ8TBF8 368 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 NMD3Q96D46 503 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ABT1Q9ULW3 272 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 V9GYQ6 96 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 SKAP2O75563 359 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 PGM3O95394 542 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 CLPTM1O96005 669 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 CCDC81Q6ZN84 652 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 LRRC49Q8IUZ0 686 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 THUMPD3Q9BV44 507 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 DDX20Q9UHI6 824 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 EIF3LQ9Y262 564 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 AP5Z1O43299 807 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 NTSR2O95665 410 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 PGK2P07205 417 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 VDRP11473 427 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 SERPINB5P36952 375 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 CASP4P49662 377 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 GIT2Q14161 759 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 TTLL9Q3SXZ7 439 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 KCTD21Q4G0X4 260 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 STX12Q86Y82 276 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 CBWD2Q8IUF1 395 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 MICALL2Q8IY33 904 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ERAP1Q9NZ08 941 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 NFKBIL1Q9UBC1 381 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 RABGEF1Q9UJ41 708 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ZNRF3Q9ULT6 936 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 SHOC2Q9UQ13 582 aa10.59□□□□□ -0.71
LIMCH1-203ENST00000396595 ADGRB3O60242 1522 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 VWA5AO00534 786 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ALDH1A1P00352 501 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 HMBSP08397 361 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 NCAM1P13591 858 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ZNF23P17027 643 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TFE3P19532 575 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 SOX6P35712 828 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TAF6P49848 677 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 IZUMO2Q6UXV1 221 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 SPOCD1Q6ZMY3 1216 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 TADA1Q96BN2 335 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 GPR63Q9BZJ6 419 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 ATP6V1HQ9UI12 483 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 PRELID1Q9Y255 219 aa10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 AAR2Q9Y312 384 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-203ENST00000396595 SNX13Q9Y5W8 968 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms