RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PAAF1Q9BRP4 392 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 EPN3Q9H201 632 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 ADAM7Q9H2U9 754 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 RRP15Q9Y3B9 282 aaKnown RBP11.64□□□□□ -0.55
TCOF1-203ENST00000394269 EXOC1LA0A1B0GW35 172 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 DESP17661 470 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 SCNN1GP51170 649 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 UBXN11Q5T124 520 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 MFSD14CQ5VZR4 134 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 NT5DC4Q86YG4 428 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 CCDC77Q9BR77 488 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 TMPRSS4Q9NRS4 437 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 KIAA1257Q9ULG3 409 aa11.64□□□□□ -0.55
TCOF1-203ENST00000394269 C3orf70A6NLC5 250 aaPredicted RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 XPOTO43592 962 aaKnown RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 GABBR2O75899 941 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 BCAR1P56945 870 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 MAP3K7CLP57077 242 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 ADIGQ0VDE8 80 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 ZBTB6Q15916 424 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 MDH1BQ5I0G3 518 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 MAP7D3Q8IWC1 876 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 CYP4X1Q8N118 509 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 BBOF1Q8ND07 529 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SLCO2A1Q92959 643 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 TCRBV7S3A2A0A539 114 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 GMNCA6NCL1 334 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 DNALI1O14645 258 aaPredicted RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 KCNN4O15554 427 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 BEST1O76090 585 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 KRT15P19012 456 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 CD52P31358 61 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 RPL22P35268 128 aaKnown RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 CLCNKBP51801 687 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SLC8A3P57103 927 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 COPS2P61201 443 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 IFT88Q13099 833 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 RHBDF2Q6PJF5 856 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 PIGZQ86VD9 579 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 NIPA2Q8N8Q9 360 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SLC35F5Q8WV83 523 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 KBTBD7Q8WVZ9 684 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 ZNF560Q96MR9 790 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 TSPYL2Q9H2G4 693 aaPredicted RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 LRRC4Q9HBW1 653 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 CNTN3Q9P232 1028 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 TRIP11Q15643 1979 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 AVILO75366 819 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SPAG7O75391 227 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 ASGR1P07306 291 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 TKTP29401 623 aaKnown RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SSTR1P30872 391 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 OLFML1Q6UWY5 402 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 POLNQ7Z5Q5 900 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 RSPH3Q86UC2 560 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 PYROXD2Q8N2H3 581 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 LRRC52Q8N7C0 313 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 MYCBPAPQ8TBZ2 947 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 ZNF473Q8WTR7 871 aaKnown RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SOCS4Q8WXH5 440 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SNRNP25Q9BV90 132 aaKnown RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 AGO3Q9H9G7 860 aaKnown RBP11.63□□□□□ -0.55
TCOF1-203ENST00000394269 XPNPEP3Q9NQH7 507 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 MIOSQ9NXC5 875 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 SLC12A6Q9UHW9 1150 aa11.63□□□□□ -0.55
TCOF1-203ENST00000394269 CAPN9O14815 690 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 CREB3O43889 395 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 B3GAT3O94766 335 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 ADAM17P78536 824 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 MRPS6P82932 125 aaKnown RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 CAV1Q03135 178 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 OASLQ15646 514 aaKnown RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 HIBCHQ6NVY1 386 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 BBS12Q6ZW61 710 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 EXOC3L1Q86VI1 746 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 OSTM1Q86WC4 334 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 B3GALNT2Q8NCR0 500 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 FNIP1Q8TF40 1166 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 PYROXD1Q8WU10 500 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 KCNK16Q96T55 309 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 MTG1Q9BT17 334 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 RSAD1Q9HA92 442 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 DDX43Q9NXZ2 648 aaKnown RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 PIRO00625 290 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 PTGESO14684 152 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 DUSP11O75319 330 aaKnown RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 CCND3P30281 292 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 PITX1P78337 314 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 ROR1Q01973 937 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 BST2Q10589 180 aaKnown RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 KCNA10Q16322 511 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 HIF1AQ16665 826 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 SV2CQ496J9 727 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 BSPRYQ5W0U4 402 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 ALKAL1Q6UXT8 129 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 PALM2Q8IXS6 379 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 ANKRD52Q8NB46 1076 aa11.62□□□□□ -0.55
TCOF1-203ENST00000394269 CMASQ8NFW8 434 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-203ENST00000394269 CEP41Q9BYV8 373 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms