RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 CDCA7Q9BWT1 371 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 AP3M1Q9Y2T2 418 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 SMNDC1O75940 238 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP49-203ENST00000394253 FARP2O94887 1054 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 PEX3P56589 373 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 ARID3BQ8IVW6 561 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 GAL3ST3Q96A11 431 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 CCSER1Q9C0I3 900 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 SIK2Q9H0K1 926 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 PIDD1Q9HB75 910 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 PNMA3Q9UL41 463 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 PNMA6FA0A0J9YX94 578 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 TSPAN4O14817 238 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 NOS1APO75052 506 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 ILF2Q12905 390 aaKnown RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 MRPL4Q9BYD3 311 aaKnown RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 GNG14A0A1W2PPG7 69 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 PLOD2O00469 737 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 RPS6KA5O75582 802 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 TRIM48Q8IWZ4 208 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 TRPV1Q8NER1 839 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 CCDC177Q9NQR7 707 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 VIRMAQ69YN4 1812 aaKnown RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 KRT36O76013 467 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 RAP1GAPP47736 663 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 PTSQ03393 145 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 MYBPC2Q14324 1141 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 KNOP1Q1ED39 458 aaKnown RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 DPY19L2Q6NUT2 758 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 CATSPER4Q7RTX7 472 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 DDX53Q86TM3 631 aaKnown RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 RTKN2Q8IZC4 609 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 SH2D3CQ8N5H7 860 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 TSPAN14Q8NG11 270 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 OXCT2Q9BYC2 517 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 CAB39LQ9H9S4 337 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 NCKAP5LQ9HCH0 1330 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 ARHGEF12Q9NZN5 1544 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 SFNP31947 248 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 DLG1Q12959 904 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 INO80DQ53TQ3 878 aaPredicted RBP13.83□□□□□ -0.2
USP49-203ENST00000394253 DENND1BQ6P3S1 775 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 MEIOBQ8N635 442 aa13.83□□□□□ -0.2
USP49-203ENST00000394253 FAM25EA8MYX2 175 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 RNMTO43148 476 aaKnown RBP13.82□□□□□ -0.2
USP49-203ENST00000394253 AKR1B1P15121 316 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 ARL3P36405 182 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 CXXC5Q7LFL8 322 aaKnown RBP13.82□□□□□ -0.2
USP49-203ENST00000394253 IQCF2Q8IXL9 164 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 C18orf8Q96DM3 657 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 PNMA8BQ9ULN7 279 aaPredicted RBP13.82□□□□□ -0.2
USP49-203ENST00000394253 SEC24AO95486 1093 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 RB1P06400 928 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 DPYDQ12882 1025 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 MAD2L1Q13257 205 aaPredicted RBP13.82□□□□□ -0.2
USP49-203ENST00000394253 GNA13Q14344 377 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 RASA2Q15283 850 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 TAF13Q15543 124 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 CLVS1Q8IUQ0 354 aaPredicted RBP13.82□□□□□ -0.2
USP49-203ENST00000394253 POP5Q969H6 163 aaKnown RBP13.82□□□□□ -0.2
USP49-203ENST00000394253 RIBC2Q9H4K1 309 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 ANAPC2Q9UJX6 822 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 LOC100653049A0A140TA62 436 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 FRMD5Q7Z6J6 570 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 PROX1Q92786 737 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 UTYO14607 1347 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 LRRC14BA6NHZ5 514 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 AP3S2P59780 193 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 SLC15A2Q16348 729 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 C4orf46Q504U0 113 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 TMIEQ8NEW7 156 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 OR6Y1Q8NGX8 325 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 AKAP1Q92667 903 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP49-203ENST00000394253 NCAM1P13591 858 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 CYP24A1Q07973 514 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 TOP3AQ13472 1001 aaPredicted RBP13.82□□□□□ -0.2
USP49-203ENST00000394253 DENND6BQ8NEG7 585 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 ZNF560Q96MR9 790 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 NAT9Q9BTE0 207 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 C2orf81A6NN90 581 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 FGRP09769 529 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 GSTT1P30711 240 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 PKP1Q13835 747 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 DGKDQ16760 1214 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 CLEC4GQ6UXB4 293 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 ADHFE1Q8IWW8 467 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 CRELD1Q96HD1 420 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 FAM213AQ9BRX8 229 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 CHRNGP07510 517 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 NR3C2P08235 984 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 KCTD1Q719H9 257 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 MUC3BQ9H195 1237 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 SYNDIG1Q9H7V2 258 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 XPR1Q9UBH6 696 aa13.82□□□□□ -0.2
USP49-203ENST00000394253 TRIM3O75382 744 aaPredicted RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 ULK1O75385 1050 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 RGS1Q08116 209 aa13.81□□□□□ -0.2
USP49-203ENST00000394253 CAMK2GQ13555 558 aaPredicted RBP13.81□□□□□ -0.2
USP49-203ENST00000394253 UBE3CQ15386 1083 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms