RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 KDELR1P24390 212 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 KRT76Q01546 638 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 PRAMEF18Q5VWM3 479 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 DENND1BQ6P3S1 775 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 RFX6Q8HWS3 928 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 POU5F2Q8N7G0 328 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 MSTO1Q9BUK6 570 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CALN1Q9BXU9 219 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 ASCC2Q9H1I8 757 aaPredicted RBP19.24■□□□□ 0.67
CCDC3-201ENST00000378825 PLAC1Q9HBJ0 212 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 PXMP2Q9NR77 195 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 FETUBQ9UGM5 382 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CNTN6Q9UQ52 1028 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CNTNAP2Q9UHC6 1331 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 IQANK1A0A1B0GTG1 560 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 C1QAP02745 245 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 SH3PXD2AQ5TCZ1 1133 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 ARHGEF16Q5VV41 709 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 C1orf146Q5VVC0 180 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 PCGF5Q86SE9 256 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 ZFAND2BQ8WV99 257 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 EPAS1Q99814 870 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 ECSITQ9BQ95 431 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 TUBB6Q9BUF5 446 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 MTMR12Q9C0I1 747 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 SLC38A10Q9HBR0 1119 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CYP26B1Q9NR63 512 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CTDP1Q9Y5B0 961 aaPredicted RBP19.24■□□□□ 0.67
CCDC3-201ENST00000378825 SLC25A3Q00325 362 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 SMAD1Q15797 465 aaKnown RBP19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CNPY1Q3B7I2 92 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 BBS12Q6ZW61 710 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 TMPRSS6Q8IU80 811 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CEP120Q8N960 986 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 SMYD3Q9H7B4 428 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 TEX264Q9Y6I9 313 aa19.24■□□□□ 0.67
CCDC3-201ENST00000378825 CALB1P05937 261 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 GSTA2P09210 222 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 PDE1BQ01064 536 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 PIGHQ14442 188 aaPredicted RBP19.23■□□□□ 0.67
CCDC3-201ENST00000378825 RASIP1Q5U651 963 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 SMC1BQ8NDV3 1235 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 SPATA18Q8TC71 538 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 TRAPPC9Q96Q05 1148 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 GORASP1Q9BQQ3 440 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 UBE2OQ9C0C9 1292 aaKnown RBP19.23■□□□□ 0.67
CCDC3-201ENST00000378825 IQCGQ9H095 443 aaKnown RBP19.23■□□□□ 0.67
CCDC3-201ENST00000378825 CISHQ9NSE2 258 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 WDR46O15213 610 aaKnown RBP19.23■□□□□ 0.67
CCDC3-201ENST00000378825 RGS20O76081 388 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 C6orf222P0C671 652 aaPredicted RBP19.23■□□□□ 0.67
CCDC3-201ENST00000378825 SFNP31947 248 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 PTPN7P35236 360 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 DSG1Q02413 1049 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 FKBP1CQ5VVH2 108 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 LPCAT4Q643R3 524 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 ZBTB33Q86T24 672 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 MCF2L2Q86YR7 1114 aa19.23■□□□□ 0.67
CCDC3-201ENST00000378825 MYLK4Q86YV6 388 aaPredicted RBP19.23■□□□□ 0.67
CCDC3-201ENST00000378825 RPAP3Q9H6T3 665 aaPredicted RBP19.23■□□□□ 0.67
CCDC3-201ENST00000378825 PIK3R2O00459 728 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 TM7SF2O76062 418 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 ACTR3P61158 418 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 PEX6Q13608 980 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 RALGPS1Q5JS13 557 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 SAMD7Q7Z3H4 446 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 HIPK4Q8NE63 616 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 AGBL3Q8NEM8 1001 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 ATG4CQ96DT6 458 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 MTBPQ96DY7 904 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 RILPQ96NA2 401 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 CAMKK2Q96RR4 588 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 NDE1Q9NXR1 346 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 DDX56Q9NY93 547 aaKnown RBP19.22■□□□□ 0.67
CCDC3-201ENST00000378825 A0A0B4J269 797 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 A8MXQ7 604 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 MAGEC1O60732 1142 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 LYPLA1O75608 230 aaPredicted RBP19.22■□□□□ 0.67
CCDC3-201ENST00000378825 DGAT1O75907 488 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 RAP1GAPP47736 663 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 LAMB3Q13751 1172 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 BAATQ14032 418 aaPredicted RBP19.22■□□□□ 0.67
CCDC3-201ENST00000378825 CFAP157Q5JU67 520 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 UBR7Q8N806 425 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 TMEM35BQ8NCS4 154 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 TEPSINQ96N21 525 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 TTLL3Q9Y4R7 772 aa19.22■□□□□ 0.67
CCDC3-201ENST00000378825 KIAA1217Q5T5P2 1943 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 BUD23O43709 281 aaKnown RBP19.21■□□□□ 0.67
CCDC3-201ENST00000378825 STAM2O75886 525 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 KRT3P12035 628 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 GRIA2P42262 883 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 CCDC33Q8N5R6 958 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 KCTD6Q8NC69 237 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 E2F7Q96AV8 911 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 CGRRF1Q99675 332 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 DDX43Q9NXZ2 648 aaKnown RBP19.21■□□□□ 0.67
CCDC3-201ENST00000378825 ANGPTL2Q9UKU9 493 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 PLLPQ9Y342 182 aa19.21■□□□□ 0.67
CCDC3-201ENST00000378825 PDE5AO76074 875 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms