RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 PCDH9Q9HC56 1237 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 SUN2Q9UH99 717 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 ANGPTL2Q9UKU9 493 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 LYPLA2O95372 231 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 CCDC130P13994 396 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 TGM2P21980 687 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 AMPD1P23109 780 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 CORO7P57737 925 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 CUL3Q13618 768 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 MAP7Q14244 749 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 RABGAP1LQ5R372 815 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 RGS9BPQ6ZS82 235 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 DCP1BQ8IZD4 617 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 NLGN2Q8NFZ4 835 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 DDX27Q96GQ7 796 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 HES6Q96HZ4 224 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 CELF6Q96J87 481 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 RPRD1AQ96P16 312 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 TINF2Q9BSI4 451 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 EFHD1Q9BUP0 239 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 FAM129AQ9BZQ8 928 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 HACD3Q9P035 362 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 CPSF2Q9P2I0 782 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 CTNNAL1Q9UBT7 734 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 AFF4Q9UHB7 1163 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 PHTF1Q9UMS5 762 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 NFASCO94856 1347 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 KBTBD13C9JR72 458 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 NVLO15381 856 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 FARP2O94887 1054 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 TTC39BQ5VTQ0 682 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 FOXR2Q6PJQ5 311 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 CXCL17Q6UXB2 119 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 ACO2Q99798 780 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 NDFIP2Q9NV92 336 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 SYF2O95926 243 aaKnown RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 SHBGP04278 402 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 PPIL2Q13356 520 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 MFSD10Q14728 455 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 TTMPQ5BVD1 217 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 LBX2Q6XYB7 198 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 DDIASQ8IXT1 998 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 WNK4Q96J92 1243 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 EGFL8Q99944 293 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 PPCSQ9HAB8 311 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 GPBP1L1Q9HC44 474 aaPredicted RBP13.69□□□□□ -0.22
NPHP4-203ENST00000378169 ARHGEF38Q9NXL2 777 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 GRID1Q9ULK0 1009 aa13.69□□□□□ -0.22
NPHP4-203ENST00000378169 ZC3H4Q9UPT8 1303 aaKnown RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 DNALI1O14645 258 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 PRRG1O14668 218 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 PPARGP37231 505 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 C12orf29Q8N999 325 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 LRRN4Q8WUT4 740 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 FAM136AQ96C01 138 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 SDCCAG3Q96C92 435 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 ELMO2Q96JJ3 720 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 SLITRK1Q96PX8 696 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 SYT15Q9BQS2 421 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 FAM96AQ9H5X1 160 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 NUDT5Q9UKK9 219 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 TRIM33Q9UPN9 1127 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 GNGT2O14610 69 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 KCNA2P16389 499 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 TARSP26639 723 aaKnown RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 ATXN3P54252 364 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 NOMO3P69849 1222 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 TWF1Q12792 350 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 DEFB106AQ8N104 65 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 CATSPERBQ9H7T0 1116 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 NINJ2Q9NZG7 142 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 IGF2BP3O00425 579 aaKnown RBP eCLIP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 CST3P01034 146 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 YWHAZP63104 245 aaKnown RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 LRRC36Q1X8D7 754 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 SIAH1Q8IUQ4 282 aa13.68□□□□□ -0.22
NPHP4-203ENST00000378169 UPF3AQ9H1J1 476 aaKnown RBP13.68□□□□□ -0.22
NPHP4-203ENST00000378169 AARSP49588 968 aaKnown RBP eCLIP13.67□□□□□ -0.22
NPHP4-203ENST00000378169 ATN1P54259 1190 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-203ENST00000378169 UGP2Q16851 508 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 ANO4Q32M45 955 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 NAPEPLDQ6IQ20 393 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 MIPOL1Q8TD10 442 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 ULK4Q96C45 1275 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 PGLYRP2Q96PD5 576 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 THTPAQ9BU02 230 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 SLC8A2Q9UPR5 921 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 MROH7Q68CQ1 1323 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 A0A0B4J269 797 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 B2RBV5 119 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 CYP1A2P05177 515 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 TAS2R40P59535 323 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 SREBF2Q12772 1141 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 LRRC15Q8TF66 581 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 SHOC2Q9UQ13 582 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 TNFSF13BQ9Y275 285 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 NKRFO15226 690 aaKnown RBP eCLIP13.67□□□□□ -0.22
NPHP4-203ENST00000378169 PGK1P00558 417 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 HMGCRP04035 888 aa13.67□□□□□ -0.22
NPHP4-203ENST00000378169 PAEPP09466 180 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms