RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CDY1Q9Y6F8 540 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 CFAP69A5D8W1 941 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 SPRY2O43597 315 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 RGS10O43665 173 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 GCATO75600 419 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 BCAR3O75815 825 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 BMP15O95972 392 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 XRCC6P12956 609 aaKnown RBP eCLIP2.72□□□□□ -1.97
VPS13A-206ENST00000376646 HOXD9P28356 352 aaPredicted RBP2.72□□□□□ -1.97
VPS13A-206ENST00000376646 NTSR1P30989 418 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 GKP32189 559 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 PTGER1P34995 402 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 DIO1P49895 249 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 RAB32Q13637 225 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 ZNF268Q14587 947 aaPredicted RBP2.72□□□□□ -1.97
VPS13A-206ENST00000376646 PPP2R5AQ15172 486 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 CNN3Q15417 329 aaKnown RBP2.72□□□□□ -1.97
VPS13A-206ENST00000376646 NFE2Q16621 373 aaPredicted RBP2.72□□□□□ -1.97
VPS13A-206ENST00000376646 CERCAMQ5T4B2 595 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 NOL8Q76FK4 1167 aaKnown RBP2.72□□□□□ -1.97
VPS13A-206ENST00000376646 TECPR1Q7Z6L1 1165 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 SIRT6Q8N6T7 355 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 NRACQ8N912 160 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 RUNDC1Q96C34 613 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 WDYHV1Q96HA8 205 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 DNMT3BQ9UBC3 853 aaKnown RBP2.72□□□□□ -1.97
VPS13A-206ENST00000376646 ASAP1Q9ULH1 1129 aa2.72□□□□□ -1.97
VPS13A-206ENST00000376646 CYP2D7A0A087X1C5 515 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 RASSF9O75901 435 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 SCGB1D2O95969 90 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 DLDP09622 509 aaKnown RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 BRAFP15056 766 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 ZKSCAN1P17029 563 aaPredicted RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 YY1P25490 414 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 IL1R2P27930 398 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 UQCRC1P31930 480 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 PTDSS1P48651 473 aaKnown RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 RPS16P62249 146 aaKnown RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 STK3Q13188 491 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 GTF2H3Q13889 308 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 CCNIQ14094 377 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 ZNF260Q3ZCT1 412 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 CERKLQ49MI3 558 aaPredicted RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 AWAT2Q6E213 333 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 WDR75Q8IWA0 830 aaKnown RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 NANOGP1Q8N7R0 232 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 C11orf44Q8N8P7 122 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 CTHRC1Q96CG8 243 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 ZNF518BQ9C0D4 1074 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 ZSCAN32Q9NX65 697 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 AFG3L2Q9Y4W6 797 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 E2F8A0AVK6 867 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 CAPN8A6NHC0 703 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 E5RJQ4 531 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 PYCARD-AS1I3L0S3 204 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 RAB27BO00194 218 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 RRP9O43818 475 aaKnown RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 RFPL1O75677 317 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 USP1O94782 785 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 PRKCBP05771 671 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 APEHP13798 732 aaKnown RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 BCAT1P54687 386 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 DEUP1Q05D60 604 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 KCNAB1Q14722 419 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 METTL25Q8N6Q8 603 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 MAFAQ8NHW3 353 aaPredicted RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 SPSB4Q96A44 273 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 A1CFQ9NQ94 594 aaKnown RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 TUBA8Q9NY65 449 aaPredicted RBP2.71□□□□□ -1.98
VPS13A-206ENST00000376646 HDAC9Q9UKV0 1011 aa2.71□□□□□ -1.98
VPS13A-206ENST00000376646 TRIM43BA6NCK2 446 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 UBE2Q2LH0YL09 131 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 PSMD9O00233 223 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TSPAN6O43657 245 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 NTN1O95631 604 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 CHRM5P08912 532 aaPredicted RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 PRKAR1BP31321 381 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 NR4A2P43354 598 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 SHC4Q6S5L8 630 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 PTCHD4Q6ZW05 846 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 KIAA0319LQ8IZA0 1049 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 PRSS3P2Q8NHM4 247 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 PNISRQ8TF01 805 aaKnown RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TRIM43Q96BQ3 446 aaPredicted RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 PPP1R9BQ96SB3 815 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 VN1R3Q9BXE9 311 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TRIM5Q9C035 493 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TMEM60Q9H2L4 133 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TMEM184CQ9NVA4 438 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TFCP2L1Q9NZI6 479 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 L1RE1Q9UN81 338 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 USP22Q9UPT9 525 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 TMEM232C9JQI7 657 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 EXOC5O00471 708 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 CD3EAPO15446 510 aaKnown RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 MT-CO3P00414 261 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 MYCLP12524 364 aaPredicted RBP2.7□□□□□ -1.98
VPS13A-206ENST00000376646 IL1R1P14778 569 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 CREB1P16220 341 aa2.7□□□□□ -1.98
VPS13A-206ENST00000376646 MCM5P33992 734 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms