RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 CGRRF1Q99675 332 aa16.46■□□□□ 0.22
COL17A1-202ENST00000369733 NAT9Q9BTE0 207 aa16.46■□□□□ 0.22
COL17A1-202ENST00000369733 TRIM54Q9BYV2 358 aa16.46■□□□□ 0.22
COL17A1-202ENST00000369733 ADAMTS13Q76LX8 1427 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 DIP2BQ9P265 1576 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 RAP1GDS1P52306 607 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 SLC12A3P55017 1021 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 ACCSLQ4AC99 568 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 LINC00523Q86TU6 105 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 CCDC103Q8IW40 242 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 TAGAPQ8N103 731 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 EMC1Q8N766 993 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 OR6Y1Q8NGX8 325 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 PPP1R2P1Q96PQ5 205 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 VIRMAQ69YN4 1812 aaKnown RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 NFIBO00712 420 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 TBC1D12O60347 775 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 NDUFS3O75489 264 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 ROR2Q01974 943 aaKnown RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 MFSD7Q6UXD7 560 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 EP400NLQ6ZTU2 488 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 LRRC71Q8N4P6 559 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 LINC00116Q8NCU8 138 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 MTMR9Q96QG7 549 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 BRD8Q9H0E9 1235 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 LRRC40Q9H9A6 602 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 CD274Q9NZQ7 290 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 MYOM1P52179 1685 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 KRT36O76013 467 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 SUPT7LO94864 414 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 DRG2P55039 364 aaKnown RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 ADARP55265 1226 aaKnown RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 CACNB2Q08289 660 aaPredicted RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 AGAP9Q5VTM2 703 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 TNIP2Q8NFZ5 429 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 LNX1Q8TBB1 728 aaPredicted RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 RMND5BQ96G75 393 aaPredicted RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 MMP19Q99542 508 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 QTRT2Q9H974 415 aaKnown RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 IARS2Q9NSE4 1012 aaKnown RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 KCNK4Q9NYG8 393 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 PCDHGB4Q9UN71 923 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 DIP2CQ9Y2E4 1556 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 PXDNQ92626 1479 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 NCANO14594 1321 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 ATP5BP06576 529 aaKnown RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 MMP13P45452 471 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 ITPK1Q13572 414 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 THEMIS2Q5TEJ8 643 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 KCNV1Q6PIU1 500 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 TEX13BQ9BXU2 312 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 RTFDC1Q9BY42 306 aaPredicted RBP16.45■□□□□ 0.22
COL17A1-202ENST00000369733 KCTD10Q9H3F6 313 aa16.45■□□□□ 0.22
COL17A1-202ENST00000369733 XRCC4Q13426 336 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 EFL1Q7Z2Z2 1120 aaKnown RBP16.44■□□□□ 0.22
COL17A1-202ENST00000369733 SHPRHQ149N8 1683 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 ARHGEF28Q8N1W1 1705 aaKnown RBP16.44■□□□□ 0.22
COL17A1-202ENST00000369733 PTPN7P35236 360 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 ITGA9Q13797 1035 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 HORMAD1Q86X24 394 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 P3H2Q8IVL5 708 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 FAM172AQ8WUF8 416 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 ELMO3Q96BJ8 720 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 TUBGCP3Q96CW5 907 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 PABPC5Q96DU9 382 aaKnown RBP16.44■□□□□ 0.22
COL17A1-202ENST00000369733 HES6Q96HZ4 224 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 ECSITQ9BQ95 431 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 SAC3D1A6NKF1 404 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 FLT3P36888 993 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 IER5Q5VY09 327 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 PRELID2Q8N945 189 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 AFF2P51816 1311 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 NME5P56597 212 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 RUNX1T1Q06455 604 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 ATP1A4Q13733 1029 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 NET1Q7Z628 596 aaPredicted RBP16.44■□□□□ 0.22
COL17A1-202ENST00000369733 UNC45BQ8IWX7 931 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 GCNAQ96QF7 691 aa16.44■□□□□ 0.22
COL17A1-202ENST00000369733 PAIP1Q9H074 479 aaKnown RBP16.44■□□□□ 0.22
COL17A1-202ENST00000369733 AVENQ9NQS1 362 aaPredicted RBP16.44■□□□□ 0.22
COL17A1-202ENST00000369733 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.44■□□□□ 0.22
COL17A1-202ENST00000369733 TXNP10599 105 aaKnown RBP16.43■□□□□ 0.22
COL17A1-202ENST00000369733 UBE3AQ05086 875 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 DPY19L2Q6NUT2 758 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 RBBP8Q99708 897 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 DCUN1D5Q9BTE7 237 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 EXOSC4Q9NPD3 245 aaKnown RBP16.43■□□□□ 0.22
COL17A1-202ENST00000369733 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.43■□□□□ 0.22
COL17A1-202ENST00000369733 PPLO60437 1756 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 MROH1Q8NDA8 1641 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 PROCP04070 461 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 ZCCHC23Q6ZST2 131 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 ZSWIM2Q8NEG5 633 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 CASP10Q92851 521 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 GLMNQ92990 594 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 CCDC126Q96EE4 140 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 GIMAP4Q9NUV9 329 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 HEATR9A2RTY3 570 aa16.43■□□□□ 0.22
COL17A1-202ENST00000369733 TNPO2O14787 897 aaKnown RBP16.43■□□□□ 0.22
COL17A1-202ENST00000369733 CYTH3O43739 400 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms