RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 C2orf81A6NN90 581 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 WNT10BO00744 389 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TXNDC9O14530 226 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 BUB1O43683 1085 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ICAM1P05362 532 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 FYNP06241 537 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 PGK2P07205 417 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CCDC130P13994 396 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TCF7P36402 384 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 PEX5P50542 639 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 IRX5P78411 483 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 RPL6Q02878 288 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 RRAGAQ7L523 313 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 LGI2Q8N0V4 545 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ATPAF2Q8N5M1 289 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TMEM159Q96B96 161 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 P2RY13Q9BPV8 354 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CLSTN3Q9BQT9 956 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 WDR18Q9BV38 432 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 DUSP23Q9BVJ7 150 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 HES7Q9BYE0 225 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 FRMD8Q9BZ67 464 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 CELF4Q9BZC1 486 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 ZDHHC5Q9C0B5 715 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ADNPQ9H2P0 1102 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ANKEF1Q9NU02 776 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 DNAAF2Q9NVR5 837 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 AFF4Q9UHB7 1163 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 INTUQ9ULD6 942 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 SCAF8Q9UPN6 1271 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 EFR3BQ9Y2G0 817 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 Q9Y3F1 56 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TTC36A6NLP5 189 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 KLRC4-KLRK1H3BQV0 150 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CLDN4O14493 209 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 NUDT14O95848 222 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 VIL1P09327 827 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 ACRP10323 421 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ME2P23368 584 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ACAT1P24752 427 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 FOXN2P32314 431 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ADD2P35612 726 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 PLA2G4AP47712 749 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 FOXO4P98177 505 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 MYBPHQ13203 477 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 OLFML2BQ68BL8 750 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 FIGLAQ6QHK4 219 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CCDC186Q7Z3E2 898 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 FAM186BQ8IYM0 893 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CELF5Q8N6W0 485 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 XXYLT1Q8NBI6 393 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TTLL11Q8NHH1 800 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 BADQ92934 168 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 KLHDC7BQ96G42 594 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 VCPIP1Q96JH7 1222 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 MAP3K3Q99759 626 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 GSDMCQ9BYG8 508 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 OSBPL2Q9H1P3 480 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 DCP1AQ9NPI6 582 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 KIAA1024Q9UPX6 916 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 GIT1Q9Y2X7 761 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 DTNAQ9Y4J8 743 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 DNMT3AQ9Y6K1 912 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 BTBD19C9JJ37 291 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 DDX3XO00571 662 aaKnown RBP eCLIP4.25□□□□□ -1.73
USH2A-202ENST00000366942 SH2B2O14492 632 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 RNASEH2AO75792 299 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 OR12D1P0DN82 309 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 NR2C1P13056 603 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 INPP5BP32019 993 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 NUBP1P53384 320 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 RCAN1P53805 252 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 RGS1Q08116 209 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 WLSQ5T9L3 541 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TPGS2Q68CL5 300 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 Q6ZUG5 572 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 IFT20Q8IY31 132 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 PEX5LQ8IYB4 626 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ZNF513Q8N8E2 541 aaPredicted RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 ATP8B4Q8TF62 1192 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CLIP3Q96DZ5 547 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 MRIQ9BWK5 157 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 LRRC4BQ9NT99 713 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 TYW1Q9NV66 732 aaKnown RBP4.25□□□□□ -1.73
USH2A-202ENST00000366942 KLHL28Q9NXS3 571 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 IL1RAPL1Q9NZN1 696 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 SORCS3Q9UPU3 1222 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 PCDHB14Q9Y5E9 798 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 RIMBP3CA6NJZ7 1639 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 RIMBP3BA6NNM3 1639 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 RIMBP3Q9UFD9 1639 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 SUPT3HO75486 399 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 ANP32DO95626 131 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 COL6A2P12110 1019 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 KLRC1P26715 233 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CCR1P32246 355 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 PPARDQ03181 441 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 SLC20A2Q08357 652 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 GPS1Q13098 491 aa4.25□□□□□ -1.73
USH2A-202ENST00000366942 CDC42EP5Q6NZY7 148 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms