RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TMEM110Q86TL2 294 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 PDIK1LQ8N165 341 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 SLC35F5Q8WV83 523 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 BRI3BPQ8WY22 251 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 SNX27Q96L92 541 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 EIF2AQ9BY44 585 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 ADAM33Q9BZ11 813 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 FAM49BQ9NUQ9 324 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 TUBGCP4Q9UGJ1 667 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 ADCY6O43306 1168 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 MTM1Q13496 603 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 GRB14Q14449 540 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 EFTUD2Q15029 972 aaKnown RBP eCLIP21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 MTFR1Q15390 333 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 BBS9Q3SYG4 887 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 BOLA3Q53S33 107 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 FAM133BQ5BKY9 247 aaKnown RBP21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 SLC27A1Q6PCB7 646 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 SCUBE3Q8IX30 993 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 FBF1Q8TES7 1133 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 DHRS4Q9BTZ2 278 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 FAM49AQ9H0Q0 323 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 ACSS3Q9H6R3 686 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 ZNF408Q9H9D4 720 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 GGT7Q9UJ14 662 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 GPR32O75388 356 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 RPA3P35244 121 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 GTF2A2P52657 109 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 SLC6A3Q01959 620 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 PDK2Q15119 407 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 SCYL2Q6P3W7 929 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 C1orf228Q6PIY5 440 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 CATSPER4Q7RTX7 472 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 C18orf25Q96B23 403 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 TINF2Q9BSI4 451 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 SYT17Q9BSW7 474 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 GCOM2Q9BZD3 368 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 ABHD16BQ9H3Z7 469 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 USP29Q9HBJ7 922 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 HES2Q9Y543 173 aa21.74■■□□□ 1.07
CCDC88B-203ENST00000359902 RRN3P2A6NIE6 340 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 TYROBPO43914 113 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 UBOX5O94941 541 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 RNASELQ05823 741 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 KRT81Q14533 505 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 GALNTL6Q49A17 601 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 ZC3H12AQ5D1E8 599 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 IQSEC1Q6DN90 963 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 ADGRD1Q6QNK2 874 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 MAP7D3Q8IWC1 876 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 PALM2Q8IXS6 379 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 PLD5Q8N7P1 536 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 NGRNQ9NPE2 291 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 GPATCH2LQ9NWQ4 482 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 PAPSS1O43252 624 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 PIAS1O75925 651 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 SETSIPP0DME0 302 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 SPARCL1Q14515 664 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 FAM172AQ8WUF8 416 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 GRAMD1AQ96CP6 724 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 LPIN3Q9BQK8 851 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 PITPNM3Q9BZ71 974 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 GRID1Q9ULK0 1009 aa21.73■■□□□ 1.07
CCDC88B-203ENST00000359902 H7C0C1 242 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 ATP5OP48047 213 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 CYB5D1Q6P9G0 228 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 ALKAL1Q6UXT8 129 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 APBB1IPQ7Z5R6 666 aaPredicted RBP21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 ANKRD23Q86SG2 305 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 IGDCC3Q8IVU1 814 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 PQLC3Q8N755 202 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 LRRC52Q8N7C0 313 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 TEKT4Q8WW24 435 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 PAFAH2Q99487 392 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 PLCD4Q9BRC7 762 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 B3GNT5Q9BYG0 378 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 PCDH18Q9HCL0 1135 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 CA4P22748 312 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 SDC4P31431 198 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 YARSP54577 528 aaKnown RBP21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 SLC1A5Q15758 541 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 SOWAHAQ2M3V2 549 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 KLHL38Q2WGJ6 581 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 GLRA4Q5JXX5 417 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 SESTD1Q86VW0 696 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 BEST2Q8NFU1 509 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 PPP1R13LQ8WUF5 828 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 USP6NLQ92738 828 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 RNF19AQ9NV58 838 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 HESX1Q9UBX0 185 aa21.72■■□□□ 1.07
CCDC88B-203ENST00000359902 UNCXA6NJT0 531 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 TSHRP16473 764 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 KRT4P19013 534 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 KCNJ11Q14654 390 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 CA9Q16790 459 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 RGS9BPQ6ZS82 235 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 FAM47EQ6ZV65 393 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 PLCD3Q8N3E9 789 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms