RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NARFQ9UHQ1 456 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 DMTF1Q9Y222 760 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 TDRKHQ9Y2W6 561 aaKnown RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 DTNAQ9Y4J8 743 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 HEMK1Q9Y5R4 338 aaPredicted RBP7.07□□□□□ -1.28
VPS39-202ENST00000348544 MAD1L1Q9Y6D9 718 aa7.07□□□□□ -1.28
VPS39-202ENST00000348544 MYH9P35579 1960 aaKnown RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 TMEM191CA6NGB0 347 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 C3orf70A6NLC5 250 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 CXorf49A8MYA2 514 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 BOLA2-SMG1P6H3BVE0 249 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 IPO5O00410 1097 aaKnown RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 UGT1A9O60656 530 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CSDE1O75534 798 aaKnown RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 RFPL1O75677 317 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CRTAMO95727 393 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 NDUFB10O96000 172 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CFBP00751 764 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 PROCP04070 461 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 TMEM191BP0C7N4 346 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ITGAXP20702 1163 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ACO1P21399 889 aaKnown RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 ALDH1B1P30837 517 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 L1CAMP32004 1257 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ECE1P42892 770 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ALDH1A3P47895 512 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CDK18Q07002 472 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CYP24A1Q07973 514 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 IKQ13123 557 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 APOFQ13790 326 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 TFDP3Q5H9I0 405 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 PLA2G4FQ68DD2 849 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 LMBRD2Q68DH5 695 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 ATG14Q6ZNE5 492 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 TRIM67Q6ZTA4 783 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 PCGF5Q86SE9 256 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 KBTBD6Q86V97 674 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 PHF13Q86YI8 300 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 UNC45BQ8IWX7 931 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 SEPT12Q8IYM1 358 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ZBTB8BQ8NAP8 495 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 TTC13Q8NBP0 860 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ACTRT2Q8TDY3 377 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 MFSD14AQ96MC6 490 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 SLX1AQ9BQ83 275 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ZNF577Q9BSK1 485 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 MRPS26Q9BYN8 205 aaKnown RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 UGT1A7Q9HAW7 530 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 UGT1A10Q9HAW8 530 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 UGT1A8Q9HAW9 530 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 PLAC1Q9HBJ0 212 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 PKD2L1Q9P0L9 805 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 BTBD7Q9P203 1132 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 NYAP2Q9P242 653 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 IP6K2Q9UHH9 426 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 APPL1Q9UKG1 709 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 TTLL3Q9Y4R7 772 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ASTN2O75129 1339 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 H3BSA7 217 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 NDC80O14777 642 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 STRNO43815 780 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 AVILO75366 819 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 SUPT3HO75486 399 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 LYPLA1O75608 230 aaPredicted RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 WEE2P0C1S8 567 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ABCD1P33897 745 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 RARRES1P49788 294 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 GTF2IP78347 998 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 WASHC5Q12768 1159 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 SPP2Q13103 211 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 BMPR2Q13873 1038 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CEP55Q53EZ4 464 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ATG16L1Q676U5 607 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 TSHZ1Q6ZSZ6 1077 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 MAVSQ7Z434 540 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ZNF410Q86VK4 478 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CRLF3Q8IUI8 442 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 NUDCD3Q8IVD9 361 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ABRAQ8N0Z2 381 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 PDIK1LQ8N165 341 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 NUP93Q8N1F7 819 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CERS5Q8N5B7 392 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 TMC2Q8TDI7 906 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 JADE3Q92613 823 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 APOL6Q9BWW8 343 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 WDR11Q9BZH6 1224 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 SLC13A1Q9BZW2 595 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 IQCGQ9H095 443 aaKnown RBP7.06□□□□□ -1.28
VPS39-202ENST00000348544 ST6GALNAC4Q9H4F1 302 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ZNF696Q9H7X3 374 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 C1orf112Q9NSG2 853 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 SSX2IPQ9Y2D8 614 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 TEX264Q9Y6I9 313 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 CEPT1Q9Y6K0 416 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 IKBKGQ9Y6K9 419 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 SCINQ9Y6U3 715 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 LOXHD1Q8IVV2 1947 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 KAT6AQ92794 2004 aa7.06□□□□□ -1.28
VPS39-202ENST00000348544 ITM2AO43736 263 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 SIN3BO75182 1162 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms