RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FAF2Q96CS3 445 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 CFAP36Q96G28 342 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 SMC6Q96SB8 1091 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 TRIM56Q9BRZ2 755 aaKnown RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 RAB6BQ9NRW1 208 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 SHOC2Q9UQ13 582 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 KRT4P19013 534 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 SDC4P31431 198 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 GPR162Q16538 588 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 DUSP28Q4G0W2 176 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 LCLAT1Q6UWP7 414 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 KIF2BQ8N4N8 673 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 TTC13Q8NBP0 860 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 LGALS13Q9UHV8 139 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 C2CD2Q9Y426 696 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 USP15Q9Y4E8 981 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 PAPSS1O43252 624 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 GABBR2O75899 941 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 SMIM10L2AP0DMW4 78 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 SMIM10L2BP0DMW5 78 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 IGFBP6P24592 240 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 RBL1P28749 1068 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 ELK3P41970 407 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 SLC1A5Q15758 541 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 CYP4V2Q6ZWL3 525 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 SPATA21Q7Z572 469 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 PNMA8AQ86V59 439 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 PDIK1LQ8N165 341 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 NAT8LQ8N9F0 302 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 CCDC110Q8TBZ0 833 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 ZC3H15Q8WU90 426 aaKnown RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 RMDN2Q96LZ7 410 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 PITPNM3Q9BZ71 974 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 GCOM2Q9BZD3 368 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 DHX35Q9H5Z1 703 aaKnown RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 RSAD1Q9HA92 442 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 GRID1Q9ULK0 1009 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 FARP1Q9Y4F1 1045 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 MYCNP04198 464 aaPredicted RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 ACAT1P24752 427 aaKnown RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CNPY4Q8N129 248 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 FAM149B1Q96BN6 582 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 TTC25Q96NG3 672 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 PAFAH2Q99487 392 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 SNRNP25Q9BV90 132 aaKnown RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CD248Q9HCU0 757 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 PIH1D1Q9NWS0 290 aaKnown RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 GGA2Q9UJY4 613 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 TRIP12Q14669 1992 aaPredicted RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 ATXN2Q99700 1313 aaKnown RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 PTPN7P35236 360 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 GRM5P41594 1212 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 BCAR1P56945 870 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 IL9RQ01113 521 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 SOWAHAQ2M3V2 549 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CTAGE3PQ8IX95 158 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CCDC63Q8NA47 563 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 GBA2Q9HCG7 927 aaPredicted RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 UBN1Q9NPG3 1134 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 EURLQ9NYK6 297 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 RABGEF1Q9UJ41 708 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 TRIM33Q9UPN9 1127 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 MFHAS1Q9Y4C4 1052 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 SPTLC1O15269 473 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 TREHO43280 583 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 TCEA3O75764 348 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 FAM155BO75949 473 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 SUN1O94901 812 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 APRTP07741 180 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 MYL3P08590 195 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 FGFR1P11362 822 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 TAC1P20366 129 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 GABRB2P47870 512 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 INCA1Q0VD86 236 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 SEPT7Q16181 437 aaKnown RBP10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CCL14Q16627 93 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 HHATQ5VTY9 493 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CGB2Q6NT52 195 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 SLC27A1Q6PCB7 646 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 ATP11CQ8NB49 1132 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CCDC134Q9H6E4 229 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 TMPRSS4Q9NRS4 437 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 KLC4Q9NSK0 619 aa10.79□□□□□ -0.68
LIMA1-201ENST00000341247 CITO14578 2027 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 ZBED1O96006 694 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 ABHD2P08910 425 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 CYP2B6P20813 491 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 GTF2A2P52657 109 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 GEMIN4P57678 1058 aaKnown RBP10.78□□□□□ -0.68
LIMA1-201ENST00000341247 OLFML1Q6UWY5 402 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PLEKHH3Q7Z736 793 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PYROXD2Q8N2H3 581 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 RNF157Q96PX1 679 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 CEP41Q9BYV8 373 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 ADAMTS10Q9H324 1103 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 ABHD16BQ9H3Z7 469 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 ACTR5Q9H9F9 607 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-201ENST00000341247 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIMA1-201ENST00000341247 FLRT1Q9NZU1 646 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PSMC3IPQ9P2W1 217 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms