RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TSEN2Q8NCE0 465 aaKnown RBP14.02□□□□□ -0.17
HMGB1-202ENST00000339872 GRK7Q8WTQ7 553 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 KCTD13Q8WZ19 329 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 NDRG1Q92597 394 aaKnown RBP14.02□□□□□ -0.17
HMGB1-202ENST00000339872 FAM149B1Q96BN6 582 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 HAUS1Q96CS2 278 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 SMOQ99835 787 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 ACBD6Q9BR61 282 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 RHOBTB2Q9BYZ6 727 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 PPP1R12CQ9BZL4 782 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 HIPK3Q9H422 1215 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.02□□□□□ -0.17
HMGB1-202ENST00000339872 DNAJB4Q9UDY4 337 aa14.02□□□□□ -0.17
HMGB1-202ENST00000339872 PRG3Q9Y2Y8 225 aaPredicted RBP14.02□□□□□ -0.17
HMGB1-202ENST00000339872 TFE3P19532 575 aaPredicted RBP14.01□□□□□ -0.17
HMGB1-202ENST00000339872 PTPN9P43378 593 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 RPL21P46778 160 aaKnown RBP14.01□□□□□ -0.17
HMGB1-202ENST00000339872 CACNA2D1P54289 1103 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 CCL23P55773 120 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 DYNLT1P63172 113 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 ADCY1Q08828 1119 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 GPS2Q13227 327 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 TCTN1Q2MV58 587 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 SLC39A5Q6ZMH5 540 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 CMASQ8NFW8 434 aaPredicted RBP14.01□□□□□ -0.17
HMGB1-202ENST00000339872 OR10T2Q8NGX3 314 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 SMARCD1Q96GM5 515 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 KCNK16Q96T55 309 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 CALN1Q9BXU9 219 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 ELAC1Q9H777 363 aaKnown RBP14.01□□□□□ -0.17
HMGB1-202ENST00000339872 LRFN2Q9ULH4 789 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 NLRC5Q86WI3 1866 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 GAS8O95995 478 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 COL6A1P12109 1028 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 NDUFV1P49821 464 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 TKTL1P51854 596 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 CDH6P55285 790 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 MRPS5P82675 430 aaKnown RBP14.01□□□□□ -0.17
HMGB1-202ENST00000339872 ARCQ7LC44 396 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 THEM5Q8N1Q8 247 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 ATL2Q8NHH9 583 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 APBB2Q92870 758 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 TMEM209Q96SK2 561 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 TMEM30AQ9NV96 361 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 PCDHB8Q9UN66 801 aa14.01□□□□□ -0.17
HMGB1-202ENST00000339872 PTPRDP23468 1912 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 DCDC2CA8MYV0 355 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 HSF2BPO75031 334 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 TYMPP19971 482 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 GATMP50440 423 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 DRG2P55039 364 aaKnown RBP14□□□□□ -0.17
HMGB1-202ENST00000339872 HDAC4P56524 1084 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 FAM193AP78312 1265 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 YWHAHQ04917 246 aaPredicted RBP14□□□□□ -0.17
HMGB1-202ENST00000339872 TRIM60Q495X7 471 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 ANKRD33Q7Z3H0 272 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 ZMIZ2Q8NF64 920 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 FMO2Q99518 471 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14□□□□□ -0.17
HMGB1-202ENST00000339872 ASIC3Q9UHC3 531 aa14□□□□□ -0.17
HMGB1-202ENST00000339872 FEZ2Q9UHY8 353 aaPredicted RBP14□□□□□ -0.17
HMGB1-202ENST00000339872 TMEM189-UBE2V1I3L0A0 370 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 LIASO43766 372 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 CST8O60676 142 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 MNX1P50219 401 aaPredicted RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 PLTPP55058 493 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 TSPY1Q01534 308 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 FAAP100Q0VG06 881 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 TAZQ16635 292 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 FAM171BQ6P995 826 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 GPRIN1Q7Z2K8 1008 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 RFX6Q8HWS3 928 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 DEFB106AQ8N104 65 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 NCAPGQ9BPX3 1015 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 C11orf84Q9BUA3 381 aaPredicted RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 DDX23Q9BUQ8 820 aaKnown RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 ADAM33Q9BZ11 813 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 ZDHHC18Q9NUE0 388 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 TMLHEQ9NVH6 421 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 GPATCH2LQ9NWQ4 482 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 GRHL1Q9NZI5 618 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 DNPEPQ9ULA0 475 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 EFR3BQ9Y2G0 817 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 TTC3P53804 2025 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 GOLGA6BA6NDN3 693 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 H3BQF6 201 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 DAB1O75553 588 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 BDNFP23560 247 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 OAS2P29728 719 aaKnown RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 MATKP42679 507 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 ATXN1P54253 815 aaKnown RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 BCAR1P56945 870 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 TLE2Q04725 743 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 PTK6Q13882 451 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 BYSLQ13895 437 aaKnown RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 KRT81Q14533 505 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 TRIP13Q15645 432 aaPredicted RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 SYDE1Q6ZW31 735 aaPredicted RBP13.99□□□□□ -0.17
HMGB1-202ENST00000339872 GSTA5Q7RTV2 222 aa13.99□□□□□ -0.17
HMGB1-202ENST00000339872 MREGQ8N565 214 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms