RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SNX24Q9Y343 169 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 A0A087WUV0 522 aaPredicted RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 NT5C1B-RDH14C9J2C7 533 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 NCAM2O15394 837 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 GPC4O75487 556 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 LTFP02788 710 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 CDH8P55286 799 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 ADCY2Q08462 1091 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 ECM1Q16610 540 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 TMA16Q96EY4 203 aaKnown RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 SNX27Q96L92 541 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 RAB23Q9ULC3 237 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 USP18Q9UMW8 372 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 B4GALT4O60513 344 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 WEE1P30291 646 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 MAP3K10Q02779 954 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 COBLL1Q53SF7 1204 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 MORN1Q5T089 497 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 CDKAL1Q5VV42 579 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 FUT10Q6P4F1 479 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 LGI2Q8N0V4 545 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 ATP11CQ8NB49 1132 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 TISP43B9A030 160 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 TSPAN3O60637 253 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 PMS1P54277 932 aaKnown RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 PDIA2Q13087 525 aaKnown RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 GKAP1Q5VSY0 366 aaPredicted RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 TTC19Q6DKK2 380 aaPredicted RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 TTC30BQ8N4P2 665 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 SLC25A41Q8N5S1 370 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 DBF4BQ8NFT6 615 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 SLC35C1Q96A29 364 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 APOL5Q9BWW9 433 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 PRDM16Q9HAZ2 1276 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 MARCH2Q9P0N8 246 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 SMIM28A0A1B0GU29 152 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 C2orf81A6NN90 581 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 NDUFS3O75489 264 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 BYSLQ13895 437 aaKnown RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 NFIL3Q16649 462 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 ANKLE1Q8NAG6 615 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 IPMKQ8NFU5 416 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 TSPAN17Q96FV3 270 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 EGFL8Q99944 293 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 EVA1BQ9NVM1 165 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 VPS9D1Q9Y2B5 631 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 CST8O60676 142 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 ADH1CP00326 375 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 PNMA6AP0CW24 399 aaPredicted RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 RARGP13631 454 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 HDCP19113 662 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 CHKAP35790 457 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 HTRA3P83110 453 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 SIAH1Q8IUQ4 282 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 AGAP3Q96P47 875 aa10.55□□□□□ -0.72
USP54-201ENST00000339859 FAM124BQ9H5Z6 455 aaPredicted RBP10.55□□□□□ -0.72
USP54-201ENST00000339859 ZW10O43264 779 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 TMCC1O94876 653 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 OR1D2P34982 312 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 CASP5P51878 434 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 COPS2P61201 443 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 FASTKD1Q53R41 847 aaKnown RBP10.54□□□□□ -0.72
USP54-201ENST00000339859 ZNF697Q5TEC3 545 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 GET4Q7L5D6 327 aaPredicted RBP10.54□□□□□ -0.72
USP54-201ENST00000339859 ECHDC2Q86YB7 292 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ARHGAP24Q8N264 748 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 LZTR1Q8N653 840 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 SMG7Q92540 1137 aaKnown RBP10.54□□□□□ -0.72
USP54-201ENST00000339859 PPP1R16AQ96I34 528 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 HSFY1Q96LI6 401 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 MBOAT7Q96N66 472 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 TBCBQ99426 244 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ULBP1Q9BZM6 244 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 BRD8Q9H0E9 1235 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 CERS4Q9HA82 394 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 CBX4O00257 560 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 RASGRF2O14827 1237 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 BAIAP3O94812 1187 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 IGSF6O95976 241 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 CNGA2Q16280 664 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 FOXR2Q6PJQ5 311 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 MFN1Q8IWA4 741 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 CHMP6Q96FZ7 201 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 SLC9A7Q96T83 725 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ADGRE3Q9BY15 652 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 RNF19AQ9NV58 838 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 MAST2Q6P0Q8 1798 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 FGFR1P11362 822 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 BRCC3P46736 316 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 PLA2G4AP47712 749 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ZNF131P52739 623 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ACAP1Q15027 740 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 TRIM48Q8IWZ4 208 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ST6GALNAC4Q9H4F1 302 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ARHGAP28Q9P2N2 729 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 ALG6Q9Y672 507 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 A0A0A6YYK5 440 aaPredicted RBP10.54□□□□□ -0.72
USP54-201ENST00000339859 EBAG9O00559 213 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 NDUFS2O75306 463 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms