RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 RGS18Q9NS28 235 aa17.75■□□□□ 0.43
DDX41-201ENST00000330503 ZNF148Q9UQR1 794 aa17.75■□□□□ 0.43
DDX41-201ENST00000330503 PRPSAP2O60256 369 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 CAPN15O75808 1086 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 ATF2P15336 505 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 NPR3P17342 541 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 PTPN9P43378 593 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 ITGA8P53708 1063 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 HDAC4P56524 1084 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 PLCB3Q01970 1234 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 LMNB2Q03252 620 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 MMRN1Q13201 1228 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 CLEC20AQ6ZU45 233 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 ZNF365Q70YC5 407 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 SYT15Q9BQS2 421 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 DDX23Q9BUQ8 820 aaKnown RBP17.74■□□□□ 0.43
DDX41-201ENST00000330503 SEMA4AQ9H3S1 761 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 TMBIM4Q9HC24 238 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 NGRNQ9NPE2 291 aaKnown RBP17.74■□□□□ 0.43
DDX41-201ENST00000330503 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.74■□□□□ 0.43
DDX41-201ENST00000330503 GOLGA6CA6NDK9 693 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 ZSCAN5DPP0CG00 497 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 GOLGA6DP0CG33 693 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 SKIP12755 728 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 ETS1P14921 441 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 IL4RP24394 825 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 CDH6P55285 790 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 OTUD4Q01804 1114 aaKnown RBP17.74■□□□□ 0.43
DDX41-201ENST00000330503 ADCY1Q08828 1119 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 GRIK3Q13003 919 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 DPYSL3Q14195 570 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 BOLA3Q53S33 107 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 SCYL2Q6P3W7 929 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 GSTA5Q7RTV2 222 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 RFX6Q8HWS3 928 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 CCDC89Q8N998 374 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 ACTL9Q8TC94 416 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 LINC01599Q8WXQ3 324 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 KCTD13Q8WZ19 329 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 PABPC3Q9H361 631 aaKnown RBP17.74■□□□□ 0.43
DDX41-201ENST00000330503 STARD7Q9NQZ5 370 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 GPATCH2LQ9NWQ4 482 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 GOLGA6AQ9NYA3 693 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 ANAPC5Q9UJX4 755 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 INPP5FQ9Y2H2 1132 aa17.74■□□□□ 0.43
DDX41-201ENST00000330503 C9IYK1 514 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 INPPL1O15357 1258 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 ITGAVP06756 1048 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 RARGP13631 454 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 CHKAP35790 457 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 BRCC3P46736 316 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 NDUFV1P49821 464 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 ZC3H12AQ5D1E8 599 aaKnown RBP17.73■□□□□ 0.43
DDX41-201ENST00000330503 TEKT4Q8WW24 435 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 MED10Q9BTT4 135 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 CALN1Q9BXU9 219 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.73■□□□□ 0.43
DDX41-201ENST00000330503 PHF24Q9UPV7 400 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 PTCH2Q9Y6C5 1203 aa17.73■□□□□ 0.43
DDX41-201ENST00000330503 ARVCFO00192 962 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 RABGGTBP53611 331 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 ATXN1P54253 815 aaKnown RBP17.72■□□□□ 0.43
DDX41-201ENST00000330503 FAM189BP81408 668 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 ADIGQ0VDE8 80 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 TUSC3Q13454 348 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 CA9Q16790 459 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 PAN2Q504Q3 1202 aaKnown RBP17.72■□□□□ 0.43
DDX41-201ENST00000330503 SMOQ99835 787 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 TMEM121Q9BTD3 319 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 FRMD8P1Q9BZ68 369 aaPredicted RBP17.72■□□□□ 0.43
DDX41-201ENST00000330503 ADAM7Q9H2U9 754 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 C10orf88Q9H8K7 445 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 TMEM30AQ9NV96 361 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 PSD3Q9NYI0 1048 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 CDH9Q9ULB4 789 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 TDRD15B5MCY1 1934 aaKnown RBP17.72■□□□□ 0.43
DDX41-201ENST00000330503 FRMPD3Q5JV73 1810 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 B3GAT3O94766 335 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 SHBGP04278 402 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 MAP3K7CLP57077 242 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 SLMAPQ14BN4 828 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 EFHC1Q5JVL4 640 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 KCTD16Q68DU8 428 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 SH2D3CQ8N5H7 860 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 TTC13Q8NBP0 860 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 MYCBPAPQ8TBZ2 947 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 PCED1BQ96HM7 432 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 SNRNP25Q9BV90 132 aaKnown RBP17.72■□□□□ 0.43
DDX41-201ENST00000330503 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.72■□□□□ 0.43
DDX41-201ENST00000330503 CALCOCO1Q9P1Z2 691 aa17.72■□□□□ 0.43
DDX41-201ENST00000330503 F8W810 466 aa17.71■□□□□ 0.43
DDX41-201ENST00000330503 CYP11A1P05108 521 aa17.71■□□□□ 0.43
DDX41-201ENST00000330503 PECAM1P16284 738 aaPredicted RBP17.71■□□□□ 0.43
DDX41-201ENST00000330503 CDK7P50613 346 aa17.71■□□□□ 0.43
DDX41-201ENST00000330503 CACNA2D1P54289 1103 aa17.71■□□□□ 0.43
DDX41-201ENST00000330503 SLC8A3P57103 927 aa17.71■□□□□ 0.43
DDX41-201ENST00000330503 MRPS5P82675 430 aaKnown RBP17.71■□□□□ 0.43
DDX41-201ENST00000330503 CAV1Q03135 178 aa17.71■□□□□ 0.43
DDX41-201ENST00000330503 IZUMO3Q5VZ72 239 aa17.71■□□□□ 0.43
DDX41-201ENST00000330503 FAM76AQ8TAV0 307 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms