RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PLGRKTQ9HBL7 147 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 UBP1Q9NZI7 540 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 TEX33O43247 280 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 MSH3P20585 1137 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 ACAT1P24752 427 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 TC2NQ8N9U0 490 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 RNPEPQ9H4A4 650 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 VPS26AO75436 327 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 CYP2D6P10635 497 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 FAM180AQ6UWF9 173 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 NOL6Q9H6R4 1146 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 GGT7Q9UJ14 662 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 E9PBE3 544 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 EEF2KO00418 725 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 RBP5P82980 135 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 GRPEL2Q8TAA5 225 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 COMMD9Q9P000 198 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 HBS1LQ9Y450 684 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 SKIV2L2P42285 1042 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 SEC24CP53992 1094 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 RAB2AP61019 212 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 MCL1Q07820 350 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 PRKAA1Q13131 559 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 STRBPQ96SI9 672 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 NUAK2Q9H093 628 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 TRMT6Q9UJA5 497 aaKnown RBP14.73□□□□□ -0.05
COL7A1-201ENST00000328333 GSAPA4D1B5 854 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 SNAPC5O75971 98 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 BAIAP3O94812 1187 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 LDLRP01130 860 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 EPB41L4BQ9H329 900 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 C17orf75Q9HAS0 396 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 SLC39A10Q9ULF5 831 aa14.73□□□□□ -0.05
COL7A1-201ENST00000328333 ADCY6O43306 1168 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 DYRK3O43781 588 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 KLHL18O94889 574 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 GUCY1A2P33402 732 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 PTRHD1Q6GMV3 140 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 KYAT3Q6YP21 454 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 ZDHHC13Q8IUH4 622 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 ATG16L2Q8NAA4 619 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 OSBP2Q969R2 916 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 FAM111AQ96PZ2 611 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 RNPEPL1Q9HAU8 725 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 ATP4AP20648 1035 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 GARTP22102 1010 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 TNFRSF8P28908 595 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 AQP5P55064 265 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 ARHGEF7Q14155 803 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 FRG1Q14331 258 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 TSHZ1Q6ZSZ6 1077 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 MYDGFQ969H8 173 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 IL1RL2Q9HB29 575 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 METTL5Q9NRN9 209 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 AFF4Q9UHB7 1163 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 NEO1Q92859 1461 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 LSM8O95777 96 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 MSL3Q8N5Y2 521 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 HOXC10Q9NYD6 342 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 CYP2C8P10632 490 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 PCSK1P29120 753 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 NFIL3Q16649 462 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 AKAP14Q86UN6 197 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 ZNF398Q8TD17 642 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 COA7Q96BR5 231 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 TMCO1Q9UM00 188 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 CD4P01730 458 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 SCNN1DP51172 638 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 TMEM132DQ14C87 1099 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 INO80DQ53TQ3 878 aaPredicted RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 BROXQ5VW32 411 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 KLHL24Q6TFL4 600 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 PRR23BQ6ZRT6 265 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 MARK2Q7KZI7 788 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 PAIP1Q9H074 479 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 HOXB8P17481 243 aaPredicted RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 ARMCX6Q7L4S7 300 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 NET1Q7Z628 596 aaPredicted RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 DEFB107AQ8IZN7 70 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 RBM46Q8TBY0 533 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 TUBE1Q9UJT0 475 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 RNF112Q9ULX5 631 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 SKAP2O75563 359 aaPredicted RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 CYBBP04839 570 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 TBC1D10BQ4KMP7 808 aaPredicted RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 FBXO42Q6P3S6 717 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 SLC26A11Q86WA9 606 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 TDRD5Q8NAT2 981 aaKnown RBP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 KLHL23Q8NBE8 558 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 GORASP1Q9BQQ3 440 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 AASDHPPTQ9NRN7 309 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.72□□□□□ -0.05
COL7A1-201ENST00000328333 KCNK4Q9NYG8 393 aa14.72□□□□□ -0.05
COL7A1-201ENST00000328333 ZC3H11AO75152 810 aaKnown RBP eCLIP14.71□□□□□ -0.05
COL7A1-201ENST00000328333 PRKAR1AP10644 381 aa14.71□□□□□ -0.05
COL7A1-201ENST00000328333 RASA1P20936 1047 aa14.71□□□□□ -0.05
COL7A1-201ENST00000328333 CASP4P49662 377 aa14.71□□□□□ -0.05
COL7A1-201ENST00000328333 OLR1P78380 273 aa14.71□□□□□ -0.05
COL7A1-201ENST00000328333 PAPD7Q5XG87 772 aaKnown RBP14.71□□□□□ -0.05
COL7A1-201ENST00000328333 DHFR2Q86XF0 187 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms