RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 TTC25Q96NG3 672 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SYT15Q9BQS2 421 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 MAGEB5Q9BZ81 275 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 KCNG1Q9UIX4 513 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 NRAPQ86VF7 1730 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SRRM3A6NNA2 597 aaPredicted RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 AIM2O14862 343 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 RBP3P10745 1247 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 CETPP11597 493 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SPATA18Q8TC71 538 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 MMP19Q99542 508 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 EBF2Q9HAK2 575 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 TXNRD2Q9NNW7 524 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 COL5A3P25940 1745 aaPredicted RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SEC24DO94855 1032 aaPredicted RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 CSPG5O95196 566 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 ATP6V1C1P21283 382 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 EIF3EP60228 445 aaKnown RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 NOMO3P69849 1222 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 OGDHQ02218 1023 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 TMEM259Q4ZIN3 620 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SLFN12LQ6IEE8 588 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 ZC3H3Q8IXZ2 948 aaKnown RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 NDUFAF2Q8N183 169 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 EIF1ADQ8N9N8 165 aaKnown RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 DEPDC1BQ8WUY9 529 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 ART4Q93070 314 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 VTI1AQ96AJ9 217 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 DHX35Q9H5Z1 703 aaKnown RBP13.18□□□□□ -0.3
RETREG3-201ENST00000309428 SLC17A7Q9P2U7 560 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 APPL1Q9UKG1 709 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 LZTS1Q9Y250 596 aa13.18□□□□□ -0.3
RETREG3-201ENST00000309428 ZBED1O96006 694 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 PAEPP09466 180 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 MSX2P35548 267 aaPredicted RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 GDF10P55107 478 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 WDR4P57081 412 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 PRAMEP78395 509 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 SLC34A1Q06495 639 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 CATSPERGQ6ZRH7 1159 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 KIAA0319LQ8IZA0 1049 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ADAM32Q8TC27 787 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 KLRG1Q96E93 195 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 RBM41Q96IZ5 413 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 MECRQ9BV79 373 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 PORCNQ9H237 461 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 TIMM13Q9Y5L4 95 aaPredicted RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 PYGLP06737 847 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 INSRRP14616 1297 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ANXA13P27216 316 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ATXN1P54253 815 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 DYNC1I2Q13409 638 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 RIPK1Q13546 671 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 CCDC142Q17RM4 750 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ANO7Q6IWH7 933 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 KRT80Q6KB66 452 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ALYREFQ86V81 257 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 MAP7D3Q8IWC1 876 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 PGLYRP2Q96PD5 576 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 UNKQ9C0B0 810 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 NIF3L1Q9GZT8 377 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 MYPNQ86TC9 1320 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 KCNN4O15554 427 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 CTSHP09668 335 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 TPBGLP0DKB5 382 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 SP100P23497 879 aaPredicted RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ADCYAP1R1P41586 468 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 GEMIN4P57678 1058 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 SESN2P58004 480 aaPredicted RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 FKBP1AP62942 108 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 NME3Q13232 169 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 MAP1SQ66K74 1059 aaPredicted RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 CATSPER4Q7RTX7 472 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ZNF354CQ86Y25 554 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 ICA1LQ8NDH6 482 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 SREK1Q8WXA9 508 aaKnown RBP13.17□□□□□ -0.3
RETREG3-201ENST00000309428 CNBD2Q96M20 576 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 TWNKQ96RR1 684 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 TMEM165Q9HC07 324 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 PCYOX1Q9UHG3 505 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 AK5Q9Y6K8 562 aa13.17□□□□□ -0.3
RETREG3-201ENST00000309428 CYP1A2P05177 515 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 RFX1P22670 979 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 ACAT1P24752 427 aaKnown RBP13.16□□□□□ -0.3
RETREG3-201ENST00000309428 KLHL38Q2WGJ6 581 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 ANKRD22Q5VYY1 191 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 ATG16L1Q676U5 607 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 CES3Q6UWW8 571 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 RAPH1Q70E73 1250 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 ARHGAP22Q7Z5H3 698 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 SCUBE1Q8IWY4 988 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 RNF168Q8IYW5 571 aaPredicted RBP13.16□□□□□ -0.3
RETREG3-201ENST00000309428 TRIM11Q96F44 468 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 BTBD10Q9BSF8 475 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 TUBB6Q9BUF5 446 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 GOLGA2P5Q9HBQ8 144 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 SOWAHBA6NEL2 793 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 PEX1O43933 1283 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 PRPSAP2O60256 369 aa13.16□□□□□ -0.3
RETREG3-201ENST00000309428 FAM155BO75949 473 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms