RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ZNF554Q86TJ5 538 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 RHOT2Q8IXI1 618 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 ARRDC4Q8NCT1 418 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 ZNF296Q8WUU4 475 aaPredicted RBP11.37□□□□□ -0.59
LSM3-201ENST00000306024 CCDC124Q96CT7 223 aaKnown RBP11.37□□□□□ -0.59
LSM3-201ENST00000306024 MKNK1Q9BUB5 465 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 CHORDC1Q9UHD1 332 aaPredicted RBP11.37□□□□□ -0.59
LSM3-201ENST00000306024 PIN4Q9Y237 131 aaKnown RBP11.37□□□□□ -0.59
LSM3-201ENST00000306024 STARD13Q9Y3M8 1113 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 PCDHGA4Q9Y5G9 962 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 NRCAMQ92823 1304 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 TTC4O95801 387 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 CCDC166P0CW27 439 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 PSMD7P51665 324 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 CDC42EP1Q00587 391 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 ACSBG2Q5FVE4 666 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 SLC25A41Q8N5S1 370 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 ENDOVQ8N8Q3 282 aaKnown RBP11.37□□□□□ -0.59
LSM3-201ENST00000306024 LRRC57Q8N9N7 239 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 SNF8Q96H20 258 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 ZMAT2Q96NC0 199 aaKnown RBP11.37□□□□□ -0.59
LSM3-201ENST00000306024 KCTD10Q9H3F6 313 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 ZDHHC18Q9NUE0 388 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 RPL26L1Q9UNX3 145 aaKnown RBP11.37□□□□□ -0.59
LSM3-201ENST00000306024 TSC22D4Q9Y3Q8 395 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 WASF2Q9Y6W5 498 aa11.37□□□□□ -0.59
LSM3-201ENST00000306024 ANKRD63C9JTQ0 380 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 GM2AP17900 193 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 CACNB2Q08289 660 aaPredicted RBP11.36□□□□□ -0.59
LSM3-201ENST00000306024 NR1H3Q13133 447 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 DCTN2Q13561 401 aaKnown RBP11.36□□□□□ -0.59
LSM3-201ENST00000306024 TRIP10Q15642 601 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 RABGAP1LQ5R372 815 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 LVRNQ6Q4G3 990 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 VSTM1Q6UX27 236 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 DPH6Q7L8W6 267 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 MAP4K3Q8IVH8 894 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 RASGEF1CQ8N431 466 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 ZBTB45Q96K62 511 aaPredicted RBP11.36□□□□□ -0.59
LSM3-201ENST00000306024 NT5C1BQ96P26 610 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 TGFB1I1O43294 461 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 SERPINB8P50452 374 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 NEK3P51956 506 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 ITGA8P53708 1063 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 TRIM32Q13049 653 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 MFSD5Q6N075 450 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 LRRC55Q6ZSA7 311 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 ICA1LQ8NDH6 482 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 PHC3Q8NDX5 983 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 SH3TC2Q8TF17 1288 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 TTC17Q96AE7 1141 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 E2F6O75461 281 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 INHAP05111 366 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 TMED10P49755 219 aaKnown RBP11.36□□□□□ -0.59
LSM3-201ENST00000306024 CCDC80Q76M96 950 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 ANKRD36BP1Q96IX9 119 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 STARD7Q9NQZ5 370 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 ARHGEF38Q9NXL2 777 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 STX18Q9P2W9 335 aaKnown RBP11.36□□□□□ -0.59
LSM3-201ENST00000306024 DNAJC12Q9UKB3 198 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 GJD2Q9UKL4 321 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 DOCK3Q8IZD9 2030 aa11.36□□□□□ -0.59
LSM3-201ENST00000306024 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 GOLGA8RI6L899 631 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 TOM1L1O75674 476 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 NOL4O94818 638 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 CLPTM1O96005 669 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 PENKP01210 267 aaPredicted RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 ZNF865P0CJ78 1059 aaPredicted RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 CTNNA2P26232 953 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 THPOP40225 353 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 DRG2P55039 364 aaKnown RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 SNRPFP62306 86 aaKnown RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 KCTD21Q4G0X4 260 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 COBLL1Q53SF7 1204 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 C1QTNF12Q5T7M4 302 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 ZDHHC24Q6UX98 284 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 B3GNT6Q6ZMB0 384 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 HES6Q96HZ4 224 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 ECSITQ9BQ95 431 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 SAR1AQ9NR31 198 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 SMG5Q9UPR3 1016 aaKnown RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 MSCO60682 206 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 IFNB1P01574 187 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 TMEM253P0C7T8 217 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 ITIH2P19823 946 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 CA8P35219 290 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 FMO5P49326 533 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 NCKAP1LP55160 1127 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 DRAP1Q14919 205 aaPredicted RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 BMT2Q1RMZ1 405 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 SLC45A4Q5BKX6 768 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 LRRC8BQ6P9F7 803 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 STKLD1Q8NE28 680 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 GFM2Q969S9 779 aaKnown RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 CADM1Q9BY67 442 aaKnown RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 UBE2TQ9NPD8 197 aaPredicted RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 MCM3APO60318 1980 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 MYH9P35579 1960 aaKnown RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 STAMBPO95630 424 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms