RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 KLHL3Q9UH77 587 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 RBM15Q96T37 977 aaKnown RBP eCLIP12.46□□□□□ -0.414e-8■■■■■ 39.7
PCF11-201ENST00000298281 PRRG3Q9BZD7 231 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 MTO1Q9Y2Z2 717 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 GNG14A0A1W2PPG7 69 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 RCVRNP35243 200 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 ALDH7A1P49419 539 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 EFHC1Q5JVL4 640 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 PAIP1Q9H074 479 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 PCDHB2Q9Y5E7 798 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 TCP11X1B4DZS4 312 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 CYP26A1O43174 497 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 GAS2O43903 313 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 ASS1P00966 412 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 TSGA10IPQ3SY00 556 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 DHX40Q8IX18 779 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 CYLDQ9NQC7 956 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.46□□□□□ -0.41
PCF11-201ENST00000298281 TMEM260Q9NX78 707 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 IL1RAPL1Q9NZN1 696 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 AMACRQ9UHK6 382 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 GRID1Q9ULK0 1009 aa12.46□□□□□ -0.41
PCF11-201ENST00000298281 DGKIO75912 1065 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 PARNO95453 639 aaKnown RBP12.46□□□□□ -0.42
PCF11-201ENST00000298281 GH1P01241 217 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 MUTP22033 750 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 MSANTD1Q6ZTZ1 278 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 ANKMY2Q8IV38 441 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 USP7Q93009 1102 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 SLITRK1Q96PX8 696 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 A0A0B4J269 797 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 ZBTB39O15060 712 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 SLC2A3P11169 496 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 PTPN9P43378 593 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 RAB2AP61019 212 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 TUBB3Q13509 450 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 THOC7Q6I9Y2 204 aaKnown RBP12.46□□□□□ -0.42
PCF11-201ENST00000298281 UBASH3BQ8TF42 649 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 TRIM9Q9C026 710 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 STOML2Q9UJZ1 356 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 TNFSF13BQ9Y275 285 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 SNX9Q9Y5X1 595 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 A2ML1A8K2U0 1454 aa12.46□□□□□ -0.42
PCF11-201ENST00000298281 WWP2O00308 870 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 PPP1R37O75864 691 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 WARSP23381 471 aaKnown RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 PNPLA4P41247 253 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 DMPKQ09013 629 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 TRIM28Q13263 835 aaKnown RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 YME1L1Q96TA2 773 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 C7orf25Q9BPX7 421 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 BHLHE41Q9C0J9 482 aaPredicted RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 PRMT7Q9NVM4 692 aaPredicted RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 VWA5AO00534 786 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 OPLAHO14841 1288 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 AREL1O15033 823 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 IDH3BO43837 385 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 PIK3R1P27986 724 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 MRPS25P82663 173 aaKnown RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 PKN2Q16513 984 aaKnown RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 CYP4A22Q5TCH4 519 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 FAR1Q8WVX9 515 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 ALKBH4Q9NXW9 302 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 SMARCAL1Q9NZC9 954 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 DYRK1BQ9Y463 629 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 TDP2O95551 362 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 SNRPAP09012 282 aaKnown RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 FMO5P49326 533 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 CEBPGP53567 150 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 NAPEPLDQ6IQ20 393 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 CHPFQ8IZ52 775 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 CINPQ9BW66 212 aaPredicted RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 UBXN6Q9BZV1 441 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 NPHS2Q9NP85 383 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 RNF181Q9P0P0 153 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 EEF2KO00418 725 aaKnown RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 IFRD1O00458 451 aaPredicted RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 NDUFS2O75306 463 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 TRIM16LQ309B1 348 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 AGMOQ6ZNB7 445 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 IKBIPQ70UQ0 350 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 HPS6Q86YV9 775 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 PJA1Q8NG27 643 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 MKNK1Q9BUB5 465 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 RPS6KA6Q9UK32 745 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 USP15Q9Y4E8 981 aaPredicted RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 LAMC1P11047 1609 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 ZNF521Q96K83 1311 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 GSG1L2A8MUP6 293 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 H3BMM5 538 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 SRP72O76094 671 aaKnown RBP12.45□□□□□ -0.42
PCF11-201ENST00000298281 SLC25A27O95847 323 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 PDGFRBP09619 1106 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 CYP2C8P10632 490 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 CBX5P45973 191 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 C10orf120Q5SQS8 335 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 SLC44A5Q8NCS7 719 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 TRPV3Q8NET8 790 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 VPS33AQ96AX1 596 aa12.45□□□□□ -0.42
PCF11-201ENST00000298281 PARK7Q99497 189 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms