RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CGRRF1Q99675 332 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 CDC42EP4Q9H3Q1 356 aaKnown RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 USE1Q9NZ43 259 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 ATP11BQ9Y2G3 1177 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 F8W810 466 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 GAS2O43903 313 aaKnown RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 LZTS3O60299 673 aaPredicted RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 RGS2P41220 211 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 TBL3Q12788 808 aaKnown RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 ZNF484Q5JVG2 852 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 STRA8Q7Z7C7 330 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 KIAA2013Q8IYS2 634 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 RIN3Q8TB24 985 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 SYTL5Q8TDW5 730 aaPredicted RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 FICDQ9BVA6 458 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 NT5MQ9NPB1 228 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 RNF19AQ9NV58 838 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 SNTG2Q9NY99 539 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 HPSEQ9Y251 543 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 THP07101 528 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 KCNMA1Q12791 1236 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 ARHGAP15Q53QZ3 475 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 ARMC6Q6NXE6 501 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 NLRP9Q7RTR0 991 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 MICU2Q8IYU8 434 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 TRAPPC12Q8WVT3 735 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 DLGAP2Q9P1A6 1054 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 FZD1Q9UP38 647 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 TMX2Q9Y320 296 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 POLR1AO95602 1720 aaPredicted RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 ADGRB3O60242 1522 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 KRT87PA6NCN2 255 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 CBX4O00257 560 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 RGL2O15211 777 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 SLC2A3P11169 496 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 ALOX15P16050 662 aaPredicted RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 CCND1P24385 295 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 MFSD4BQ5TF39 518 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 SPOCD1Q6ZMY3 1216 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 DEFB128Q7Z7B8 93 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 PDCD2LQ9BRP1 358 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 AGO4Q9HCK5 861 aaKnown RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 VPS28Q9UK41 221 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 LAMTOR4Q0VGL1 99 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 PKN1Q16512 942 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 C9orf131Q5VYM1 1079 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 PTAR1Q7Z6K3 402 aaPredicted RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 ERO1BQ86YB8 467 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 UNC45BQ8IWX7 931 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TRIM48Q8IWZ4 208 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TMEM176AQ96HP8 235 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 PAFAH2Q99487 392 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 RAD18Q9NS91 495 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 PXDNLA1KZ92 1463 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TPH1P17752 444 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 S100A5P33763 92 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 HIST2H2ACQ16777 129 aaPredicted RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 OLFML2BQ68BL8 750 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 HIST2H2AA3Q6FI13 130 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 IYDQ6PHW0 289 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 C4orf22Q6V702 233 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 CCDC60Q8IWA6 550 aaPredicted RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 KCTD17Q8N5Z5 321 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 ZNF614Q8N883 585 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 PRPF18Q99633 342 aaKnown RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 CDC42BPAQ5VT25 1732 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TRPC5OSA6NMA1 111 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 E9PBE3 544 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 CYTH3O43739 400 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 KLHL41O60662 606 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 GARTP22102 1010 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 CAPZA2P47755 286 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TKTL1P51854 596 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 BCAT1P54687 386 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 PTPN11Q06124 597 aaPredicted RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 CSHL1Q14406 222 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 RCN1Q15293 331 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 NFIL3Q16649 462 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 CCDC142Q17RM4 750 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TTLL9Q3SXZ7 439 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 AASDHQ4L235 1098 aaPredicted RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 CENPPQ6IPU0 288 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 ERAP2Q6P179 960 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 SCUBE2Q9NQ36 999 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 BLOC1S6Q9UL45 172 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 M0R3G1 203 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 GLRA3O75311 464 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 NCALDP61601 193 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 CXCL9Q07325 125 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 SREBF2Q12772 1141 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 C3orf67Q6ZVT6 689 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TFAP2DQ7Z6R9 452 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 CIPCQ9C0C6 399 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 DNAJC16Q9Y2G8 782 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 ERI2A8K979 691 aaKnown RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 H3BRB1 525 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 ITGB6P18564 788 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 SCNN1BP51168 640 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 AQP5P55064 265 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 OXCT1P55809 520 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms