RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 SNAPC2Q13487 334 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 NAPEPLDQ6IQ20 393 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 CCDC33Q8N5R6 958 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 SLC44A5Q8NCS7 719 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 NSL1Q96IY1 281 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 FAM129BQ96TA1 746 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 PARK7Q99497 189 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF839A8K0R7 811 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 PLA2G6O60733 806 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 S100A9P06702 114 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 BCAP31P51572 246 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 CRYMQ14894 314 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 TSPAN14Q8NG11 270 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ILKAPQ9H0C8 392 aaPredicted RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ATMINO43313 823 aaPredicted RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 GLRBP48167 497 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ITGADQ13349 1161 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 MAPK11Q15759 364 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 TRMT11Q7Z4G4 463 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 TMEM169Q96HH4 297 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 TMA7Q9Y2S6 64 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 H7C4K7 107 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 FOXP2O15409 715 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 CKMP06732 381 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 SCNN1BP51168 640 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 WDR35Q9P2L0 1181 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF608Q9ULD9 1512 aaPredicted RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 PABPC1P11940 636 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 MSH3P20585 1137 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 NUP107P57740 925 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 NFYCQ13952 458 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 CCSAPQ6IQ19 270 aaPredicted RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 NOTUMQ6P988 496 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF512BQ96KM6 892 aaPredicted RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 H7C0S8 307 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 WARSP23381 471 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 NMT1P30419 496 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 KLHL12Q53G59 568 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 APEX2Q9UBZ4 518 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ASNA1O43681 348 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 KBTBD12Q3ZCT8 623 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ATF7IP2Q5U623 682 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 CHPFQ8IZ52 775 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 IL17REQ8NFR9 667 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 NEK7Q8TDX7 302 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 RMND5BQ96G75 393 aaPredicted RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 C9orf72Q96LT7 481 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF112Q9UJU3 913 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 TAF4O00268 1085 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 PSTPIP1O43586 416 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 ANXA9O76027 345 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 FGD3Q5JSP0 725 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 OLFML2AQ68BL7 652 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 MRNIPQ6NTE8 343 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 DENND1BQ6P3S1 775 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 UNC5CLQ8IV45 518 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 FBXO32Q969P5 355 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 E2F7Q96AV8 911 aa11.74□□□□□ -0.53
PTPN4-201ENST00000263708 PPP1R10Q96QC0 940 aaKnown RBP11.74□□□□□ -0.53
PTPN4-201ENST00000263708 PSMB9P28065 219 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ARHGDIBP52566 201 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 SLC4A9Q96Q91 983 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 BBS4Q96RK4 519 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 OSBPL8Q9BZF1 889 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 PP2D1A8MPX8 630 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ZC3H11AO75152 810 aaKnown RBP eCLIP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 KHDRBS3O75525 346 aaKnown RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 TCEA3O75764 348 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 PDHA2P29803 388 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 SCRN3Q0VDG4 424 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 EFCAB12Q6NXP0 572 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 RBBP8NLQ8NC74 664 aaPredicted RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 HPDLQ96IR7 371 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 RPRD1AQ96P16 312 aaPredicted RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ITGB6P18564 788 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 KYNUQ16719 465 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 FIG4Q92562 907 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 KLK14Q9P0G3 267 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 RCOR1Q9UKL0 485 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 NCAPD2Q15021 1401 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 TIMM44O43615 452 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 RCVRNP35243 200 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 SRP54P61011 504 aaKnown RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 SNRNP35Q16560 246 aaKnown RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 CACUL1Q86Y37 369 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ZNF473Q8WTR7 871 aaKnown RBP11.73□□□□□ -0.53
PTPN4-201ENST00000263708 VPS28Q9UK41 221 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 TAF5Q15542 800 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 RNF180Q86T96 592 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 CLIP3Q96DZ5 547 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 LYVE1Q9Y5Y7 322 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 ANO9A1A5B4 782 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 H3BMM5 538 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 KATNA1O75449 491 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 HSD3B2P26439 372 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 PTSQ03393 145 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 RESTQ13127 1097 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 TMEM26Q6ZUK4 368 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 FAM20CQ8IXL6 584 aa11.73□□□□□ -0.53
PTPN4-201ENST00000263708 SLC20A1Q8WUM9 679 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms