RNA–Protein interactions for RNA: ENST00000254941.6

NIP7-202, Transcript of NIP7, nucleolar pre-rRNA processing protein, humanhuman

TSL 1 (best) BASIC

Gene NIP7, Length 1,887 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7-202ENST00000254941 ZNF558Q96NG5 402 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 YME1L1Q96TA2 773 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 VN1R3Q9BXE9 311 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 CHST7Q9NS84 486 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 RBM12Q9NTZ6 932 aaKnown RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 MRPL42Q9Y6G3 142 aaKnown RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 PLXNA3P51805 1871 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 CEP290O15078 2479 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 COL4A4P53420 1690 aaPredicted RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 SART1O43290 800 aaKnown RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 ZRANB2O95218 330 aaKnown RBP eCLIP9.91□□□□□ -0.82
NIP7-202ENST00000254941 GJB5O95377 273 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 C7P10643 843 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 LAG3P18627 525 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 CYP2F1P24903 491 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 SDC4P31431 198 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 SSR1P43307 286 aaKnown RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 PTPN9P43378 593 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 RABGGTBP53611 331 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 EPHB4P54760 987 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 YWHAZP63104 245 aaKnown RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 HTRA4P83105 476 aaPredicted RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 SMARCB1Q12824 385 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 GPR17Q13304 367 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 ELF2Q15723 593 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 TMEM240Q5SV17 173 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 SPOUT1Q5T280 376 aaKnown RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 TXNRD3NBQ6F5E7 133 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 PM20D1Q6GTS8 502 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 PSRC1Q6PGN9 363 aaPredicted RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 VSTM1Q6UX27 236 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 C7orf61Q8IZ16 206 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 SLC39A11Q8N1S5 342 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 SCML4Q8N228 414 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 GPR161Q8N6U8 529 aaKnown RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 CENPIQ92674 756 aaPredicted RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 NCAPGQ9BPX3 1015 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 C11orf84Q9BUA3 381 aaPredicted RBP9.91□□□□□ -0.82
NIP7-202ENST00000254941 PCDHB5Q9Y5E4 795 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 USP3Q9Y6I4 520 aa9.91□□□□□ -0.82
NIP7-202ENST00000254941 ZBBXA8MT70 800 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 CCDC188H7C350 402 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 KRIT1O00522 736 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 ZBED1O96006 694 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 KRT7P08729 469 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 DESP17661 470 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 IL1R2P27930 398 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 MIPP30301 263 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 GRIK1P39086 918 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 MATKP42679 507 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 MAGEA11P43364 429 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 DAOAP59103 153 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 HADHQ16836 314 aaKnown RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 LONRF2Q1L5Z9 754 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 C15orf59Q2T9L4 293 aaPredicted RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 ATP13A4Q4VNC1 1196 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 SH3PXD2AQ5TCZ1 1133 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 SLC8B1Q6J4K2 584 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 RSPO2Q6UXX9 243 aaPredicted RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 SLC13A5Q86YT5 568 aaPredicted RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 RCOR2Q8IZ40 523 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 COLGALT1Q8NBJ5 622 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 PIK3R5Q8WYR1 880 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 NDRG1Q92597 394 aaKnown RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 NT5C3BQ969T7 300 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 FAM149B1Q96BN6 582 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 TMEM169Q96HH4 297 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 PHF12Q96QT6 1004 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 DDX23Q9BUQ8 820 aaKnown RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 ULBP1Q9BZM6 244 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 SCUBE2Q9NQ36 999 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 DDX56Q9NY93 547 aaKnown RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 ABI2Q9NYB9 513 aaPredicted RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.9□□□□□ -0.82
NIP7-202ENST00000254941 CXXC1Q9P0U4 656 aaPredicted RBP9.9□□□□□ -0.82
NIP7-202ENST00000254941 MTRRQ9UBK8 725 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 USP18Q9UMW8 372 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 PLXNA4Q9HCM2 1894 aa9.9□□□□□ -0.82
NIP7-202ENST00000254941 TNFRSF10BO14763 440 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 DAB1O75553 588 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 TRUB2O95900 331 aaKnown RBP9.89□□□□□ -0.83
NIP7-202ENST00000254941 SOD2P04179 222 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 USP17L7P0C7H9 530 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 CPB1P15086 417 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 NOS2P35228 1153 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 COPS2P61201 443 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 ATP11AP98196 1134 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 CDO1Q16878 200 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 SLC25A52Q3SY17 297 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 PRSS55Q6UWB4 352 aaPredicted RBP9.89□□□□□ -0.83
NIP7-202ENST00000254941 CYP4V2Q6ZWL3 525 aaPredicted RBP9.89□□□□□ -0.83
NIP7-202ENST00000254941 BHLHA9Q7RTU4 235 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 FBXO22Q8NEZ5 403 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 C2orf15Q8WU43 125 aaKnown RBP9.89□□□□□ -0.83
NIP7-202ENST00000254941 FAM172AQ8WUF8 416 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 IRGQQ8WZA9 623 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 RBM41Q96IZ5 413 aaKnown RBP9.89□□□□□ -0.83
NIP7-202ENST00000254941 C8orf48Q96LL4 319 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 SLC2A13Q96QE2 648 aa9.89□□□□□ -0.83
NIP7-202ENST00000254941 HTATIP2Q9BUP3 242 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms