RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SPP2Q13103 211 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 TFDP3Q5H9I0 405 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 DPY19L2Q6NUT2 758 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 TRIM67Q6ZTA4 783 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 PTAR1Q7Z6K3 402 aaPredicted RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 RFX6Q8HWS3 928 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 METTL25Q8N6Q8 603 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 MRPL1Q9BYD6 325 aaKnown RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 WWP1Q9H0M0 922 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 KMT5AQ9NQR1 393 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 SOX13Q9UN79 622 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 SHOC2Q9UQ13 582 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 A0A0J9YVX5 310 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 BOLA2-SMG1P6H3BVE0 249 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 P4HA2O15460 535 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 HLA-DRAP01903 254 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 NPTX2P47972 431 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 GPC3P51654 580 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 ADARP55265 1226 aaKnown RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 MAP3K10Q02779 954 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 CCNIQ14094 377 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 KCTD21Q4G0X4 260 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 C6orf52Q5T4I8 152 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 DNAJC24Q6P3W2 148 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 TTLL6Q8N841 843 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 UBAP1Q9NZ09 502 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 SCAF8Q9UPN6 1271 aaKnown RBP14.95□□□□□ -0.02
SDC1-201ENST00000254351 DNAJC16Q9Y2G8 782 aa14.95□□□□□ -0.02
SDC1-201ENST00000254351 hCG_1818297A0A087WSY0 165 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 TTLL13PA6NNM8 815 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 H3BSA7 217 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 XPO1O14980 1071 aaKnown RBP14.94□□□□□ -0.02
SDC1-201ENST00000254351 VILLO15195 856 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 DKC1O60832 514 aaKnown RBP eCLIP14.94□□□□□ -0.02
SDC1-201ENST00000254351 SLC18A1P54219 525 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 NCKAP1LP55160 1127 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 NOMO3P69849 1222 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 OASLQ15646 514 aaKnown RBP14.94□□□□□ -0.02
SDC1-201ENST00000254351 C1orf228Q6PIY5 440 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 UNC5BQ8IZJ1 945 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 ZFP28Q8NHY6 868 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 DCAF4Q8WV16 495 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 BSNDQ8WZ55 320 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 STRA6Q9BX79 667 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 IL1RAPL1Q9NZN1 696 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 F8W8V4 182 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 IL1R1P14778 569 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 MMRN1Q13201 1228 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 CNGA3Q16281 694 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 ZBTB41Q5SVQ8 909 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 BSPRYQ5W0U4 402 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.94□□□□□ -0.02
SDC1-201ENST00000254351 PGBD4Q96DM1 585 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 FAM81BQ96LP2 452 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 ZNRF3Q9ULT6 936 aa14.94□□□□□ -0.02
SDC1-201ENST00000254351 TNRC6CQ9HCJ0 1690 aaKnown RBP14.94□□□□□ -0.02
SDC1-201ENST00000254351 PTPRJQ12913 1337 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 TFPTP0C1Z6 253 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 GTF2H1P32780 548 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 HPCAP84074 193 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 DLGAP5Q15398 846 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 DNAL1Q4LDG9 190 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 APOBEC3HQ6NTF7 200 aaKnown RBP14.93□□□□□ -0.02
SDC1-201ENST00000254351 SLC39A4Q6P5W5 647 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 LRRC8BQ6P9F7 803 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 RAB3IL1Q8TBN0 382 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 ATXN7L3BQ96GX2 97 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 ZBTB45Q96K62 511 aaPredicted RBP14.93□□□□□ -0.02
SDC1-201ENST00000254351 USP29Q9HBJ7 922 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 PCDH9Q9HC56 1237 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 ANLNQ9NQW6 1124 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 PARVAQ9NVD7 372 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 TMCO1Q9UM00 188 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 QSER1Q2KHR3 1735 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 RAD17O75943 681 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 EIF2AK2P19525 551 aaKnown RBP14.93□□□□□ -0.02
SDC1-201ENST00000254351 STIP1P31948 543 aaKnown RBP14.93□□□□□ -0.02
SDC1-201ENST00000254351 STAT2P52630 851 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 MRPS5P82675 430 aaKnown RBP14.93□□□□□ -0.02
SDC1-201ENST00000254351 CYP24A1Q07973 514 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 TATDN1Q6P1N9 297 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 TMC7Q7Z402 723 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 ADAM32Q8TC27 787 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 FAF2Q96CS3 445 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 MIS12Q9H081 205 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 APOBEC3GQ9HC16 384 aaKnown RBP14.93□□□□□ -0.02
SDC1-201ENST00000254351 PNPOQ9NVS9 261 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 DTNAQ9Y4J8 743 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 NR2E3Q9Y5X4 410 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 UBE4BO95155 1302 aa14.93□□□□□ -0.02
SDC1-201ENST00000254351 E9PBE3 544 aa14.92□□□□□ -0.02
SDC1-201ENST00000254351 AIM2O14862 343 aa14.92□□□□□ -0.02
SDC1-201ENST00000254351 DCXO43602 365 aa14.92□□□□□ -0.02
SDC1-201ENST00000254351 TBC1D12O60347 775 aa14.92□□□□□ -0.02
SDC1-201ENST00000254351 KLHL41O60662 606 aa14.92□□□□□ -0.02
SDC1-201ENST00000254351 RBP3P10745 1247 aa14.92□□□□□ -0.02
SDC1-201ENST00000254351 CDKN2BP42772 138 aa14.92□□□□□ -0.02
SDC1-201ENST00000254351 EIF3EP60228 445 aaKnown RBP14.92□□□□□ -0.02
SDC1-201ENST00000254351 MRPS22P82650 360 aaKnown RBP14.92□□□□□ -0.02
SDC1-201ENST00000254351 MYLK3Q32MK0 819 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms