RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 IER5Q5VY09 327 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 LBX2Q6XYB7 198 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 BBS12Q6ZW61 710 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 ALYREFQ86V81 257 aaKnown RBP22.24■■□□□ 1.15
TRIM28-201ENST00000253024 SESTD1Q86VW0 696 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 HPDLQ96IR7 371 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 TSPAN16Q9UKR8 245 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 SMG5Q9UPR3 1016 aaKnown RBP22.24■■□□□ 1.15
TRIM28-201ENST00000253024 TRUB2O95900 331 aaKnown RBP22.23■■□□□ 1.15
TRIM28-201ENST00000253024 EFNA5P52803 228 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 FYB2Q5VWT5 728 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 ARMC2Q8NEN0 867 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 TMEM176AQ96HP8 235 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 PDGFRBP09619 1106 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 RABGGTBP53611 331 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 TAF11Q15544 211 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 MPP5Q8N3R9 675 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 TSSK1BQ9BXA7 367 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 YY1AP1Q9H869 796 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 GEMIN8Q9NWZ8 242 aaKnown RBP22.23■■□□□ 1.15
TRIM28-201ENST00000253024 MCM3APO60318 1980 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 IGKV6D-21A0A0A0MT36 114 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 PRPF4O43172 522 aaKnown RBP eCLIP22.23■■□□□ 1.151e-9■■■□□ 18.4
TRIM28-201ENST00000253024 PRPSAP2O60256 369 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 TRMT10BQ6PF06 316 aaKnown RBP22.23■■□□□ 1.15
TRIM28-201ENST00000253024 IQCGQ9H095 443 aaKnown RBP22.23■■□□□ 1.15
TRIM28-201ENST00000253024 DENND2DQ9H6A0 471 aaPredicted RBP22.23■■□□□ 1.15
TRIM28-201ENST00000253024 STRIP2Q9ULQ0 834 aa22.23■■□□□ 1.15
TRIM28-201ENST00000253024 PHIPQ8WWQ0 1821 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 PEX19P40855 299 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 CASC4Q6P4E1 433 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 DSTYKQ6XUX3 929 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 MIPEPQ99797 713 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 ACSS3Q9H6R3 686 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 TMPRSS4Q9NRS4 437 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 ZNF112Q9UJU3 913 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 ACTL7BQ9Y614 415 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 INSRRP14616 1297 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 MCCD1P59942 119 aaPredicted RBP22.22■■□□□ 1.15
TRIM28-201ENST00000253024 LRRC38Q5VT99 294 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 TLDC1Q6P9B6 456 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 RIBC1Q8N443 379 aaPredicted RBP22.22■■□□□ 1.15
TRIM28-201ENST00000253024 DNERQ8NFT8 737 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 NLRP7Q8WX94 980 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 PLCD4Q9BRC7 762 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 SHCBP1LQ9BZQ2 653 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 SUFUQ9UMX1 484 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 SNX9Q9Y5X1 595 aa22.22■■□□□ 1.15
TRIM28-201ENST00000253024 POLR2AP24928 1970 aaKnown RBP22.21■■□□□ 1.15
TRIM28-201ENST00000253024 ACKR2O00590 384 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 RELL1Q8IUW5 271 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 TMEM120AQ9BXJ8 343 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 PCMTD2Q9NV79 361 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 DDNO94850 711 aaPredicted RBP22.21■■□□□ 1.15
TRIM28-201ENST00000253024 CCNB1P14635 433 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 ICAM3P32942 547 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 YARSP54577 528 aaKnown RBP22.21■■□□□ 1.15
TRIM28-201ENST00000253024 ZNF200P98182 395 aaPredicted RBP22.21■■□□□ 1.15
TRIM28-201ENST00000253024 PMF1Q6P1K2 205 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 CLNKQ7Z7G1 428 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 ATXN7L3BQ96GX2 97 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 FAM49AQ9H0Q0 323 aaPredicted RBP22.21■■□□□ 1.15
TRIM28-201ENST00000253024 EBF2Q9HAK2 575 aa22.21■■□□□ 1.15
TRIM28-201ENST00000253024 TROVE2P10155 538 aaKnown RBP eCLIP22.2■■□□□ 1.158e-18■□□□□ 9.2
TRIM28-201ENST00000253024 MYL2P10916 166 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 CCND1P24385 295 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 GPD2P43304 727 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 MXD4Q14582 209 aaPredicted RBP22.2■■□□□ 1.15
TRIM28-201ENST00000253024 GOLGA7BQ2TAP0 167 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 CHST13Q8NET6 341 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 FBXO27Q8NI29 283 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 FAM172AQ8WUF8 416 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 GRAMD1AQ96CP6 724 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 ACSS2Q9NR19 701 aa22.2■■□□□ 1.15
TRIM28-201ENST00000253024 APOC4-APOC2K7ER74 178 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 ZBED1O96006 694 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 APOC2P02655 101 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 ADORA2BP29275 332 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 ARFIP2P53365 341 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 MBTD1Q05BQ5 628 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 OLIG2Q13516 323 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 PPP1R26Q5T8A7 1209 aaPredicted RBP22.2■■□□□ 1.14
TRIM28-201ENST00000253024 DRICH1Q6PGQ1 229 aaPredicted RBP22.2■■□□□ 1.14
TRIM28-201ENST00000253024 ADGRD1Q6QNK2 874 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 CES3Q6UWW8 571 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 BANPQ8N9N5 519 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 NLGN2Q8NFZ4 835 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 C12orf42Q96LP6 360 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 PCDHGC3Q9UN70 934 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 MED7O43513 233 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 BCAR1P56945 870 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 GBE1Q04446 702 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 SLC10A6Q3KNW5 377 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 C16orf46Q6P387 395 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 KIF12Q96FN5 646 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 CYTH2Q99418 400 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 ZC3H7BQ9UGR2 993 aaKnown RBP22.2■■□□□ 1.14
TRIM28-201ENST00000253024 SLC24A2Q9UI40 661 aa22.2■■□□□ 1.14
TRIM28-201ENST00000253024 DCTN3O75935 186 aa22.19■■□□□ 1.14
TRIM28-201ENST00000253024 CYP2C8P10632 490 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms