RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 MOCS2O96007 188 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 TPH1P17752 444 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MGAT1P26572 445 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 GNL1P36915 607 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 KPNA2P52292 529 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 LAMTOR4Q0VGL1 99 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DGKZQ13574 1117 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PCSK7Q16549 785 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 TRMT5Q32P41 509 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 NUP93Q8N1F7 819 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ING2Q9H160 280 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RPTORQ8N122 1335 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 IGKV6D-41A0A0C4DH26 115 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CXCL8P10145 99 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 HSPA8P11142 646 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PTPN4P29074 926 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DPYSL3Q14195 570 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PGM5Q15124 567 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PDCD2Q16342 344 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 KBTBD12Q3ZCT8 623 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ANGEL2Q5VTE6 544 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ZCCHC23Q6ZST2 131 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 TRIM67Q6ZTA4 783 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CCDC60Q8IWA6 550 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DAW1Q8N136 415 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DCPSQ96C86 337 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 HIC2Q96JB3 615 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MFSD14AQ96MC6 490 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 SLC12A6Q9UHW9 1150 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 HACL1Q9UJ83 578 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ITGB4P16144 1822 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 A0A0B4J269 797 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 H0YGN5 161 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RASSF9O75901 435 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 STAG3L1P0CL83 205 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 AMPD1P23109 780 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 SULT1E1P49888 294 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 NDST1P52848 882 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MARSP56192 900 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 TSTA3Q13630 321 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 TDRD10Q5VZ19 366 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RP1L1Q8IWN7 2480 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RDM1Q8NG50 284 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 IARS2Q9NSE4 1012 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 NFS1Q9Y697 457 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ZNF142P52746 1687 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 SPAG6O75602 509 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MT-CO1P00395 513 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CLK2P49760 499 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CRADDP78560 199 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RNF43Q68DV7 783 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 APOBEC3FQ8IUX4 373 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RFWD2Q8NHY2 731 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ELMO2Q96JJ3 720 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 UBP1Q9NZI7 540 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PACSIN3Q9UKS6 424 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 STARD13Q9Y3M8 1113 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PPP1R12AO14974 1030 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PMPCBO75439 489 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MXD4Q14582 209 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DDIASQ8IXT1 998 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 BSNDQ8WZ55 320 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DRC3Q9H069 523 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ZDHHC18Q9NUE0 388 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 NAV1Q8NEY1 1877 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 WDR27A2RRH5 827 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MAGEA13PA6NCF6 341 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 VDRP11473 427 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CCNA1P78396 465 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 YWHAHQ04917 246 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 STK32AQ8WU08 396 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 APOPT1Q96IL0 206 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 SRPK1Q96SB4 655 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ZBTB18Q99592 522 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ZBBXA8MT70 800 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 GOLGA8TH3BQL2 631 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ZMPSTE24O75844 475 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RXRBP28702 533 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 TPI1P60174 286 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PHEXP78562 749 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 NSUN2Q08J23 767 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 BOLA3Q53S33 107 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 POLNQ7Z5Q5 900 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CCDC117Q8IWD4 279 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 OR6J1Q8NGC5 347 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PPP1R13LQ8WUF5 828 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 NMD3Q96D46 503 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CMTM5Q96DZ9 223 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 E9PBE3 544 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 KLHL41O60662 606 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 HUS1O60921 280 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 STIP1P31948 543 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PEX5P50542 639 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PKNOX1P55347 436 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 BST1Q10588 318 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ITPRIPL1Q6GPH6 555 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 FBXO16Q8IX29 292 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 TFB1MQ8WVM0 346 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 OXNAD1Q96HP4 312 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CEP41Q9BYV8 373 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms