RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C RTR2Q12378 196 aa-0.61□□□□□ -2.51
NIP1YMR309C YNL042W-BQ3E7Z2 85 aa-0.61□□□□□ -2.51
NIP1YMR309C MIC10Q96VH5 97 aa-0.61□□□□□ -2.51
NIP1YMR309C MMS1Q06211 1407 aa-0.61□□□□□ -2.51
NIP1YMR309C NUM1Q00402 2748 aa-0.62□□□□□ -2.51
NIP1YMR309C YBL044WP38194 122 aa-0.62□□□□□ -2.51
NIP1YMR309C YLR099W-AQ3E798 87 aa-0.62□□□□□ -2.51
NIP1YMR309C YMR001C-AQ8TGS9 76 aa-0.62□□□□□ -2.51
NIP1YMR309C BPH1P25356 2167 aa-0.62□□□□□ -2.51
NIP1YMR309C ECM12O13529 151 aa-0.62□□□□□ -2.51
NIP1YMR309C PAU1P0CE88 120 aa-0.62□□□□□ -2.51
NIP1YMR309C PAU14P0CE89 120 aa-0.62□□□□□ -2.51
NIP1YMR309C PAU8P0CE92 120 aa-0.62□□□□□ -2.51
NIP1YMR309C PAU11P0CE93 120 aa-0.62□□□□□ -2.51
NIP1YMR309C YBL071CP38185 102 aa-0.62□□□□□ -2.51
NIP1YMR309C PAU13P38725 120 aa-0.62□□□□□ -2.51
NIP1YMR309C PAU10Q03050 120 aa-0.62□□□□□ -2.51
NIP1YMR309C PAU9Q3E770 120 aa-0.62□□□□□ -2.51
NIP1YMR309C Q0032Q9ZZX7 96 aa-0.62□□□□□ -2.51
NIP1YMR309C COA2Q3E823 68 aa-0.63□□□□□ -2.51
NIP1YMR309C YOS1Q3E834 85 aa-0.63□□□□□ -2.51
NIP1YMR309C EDC1P53080 175 aaPredicted RBP-0.63□□□□□ -2.51
NIP1YMR309C SPC2Q04969 178 aa-0.63□□□□□ -2.51
NIP1YMR309C YLR042CQ07990 161 aa-0.63□□□□□ -2.51
NIP1YMR309C YMR105W-AQ8TGS8 64 aa-0.63□□□□□ -2.51
NIP1YMR309C LYS2P07702 1392 aa-0.63□□□□□ -2.51
NIP1YMR309C KRE5P22023 1365 aa-0.63□□□□□ -2.51
NIP1YMR309C ROX3P25046 220 aa-0.64□□□□□ -2.51
NIP1YMR309C TOM6P33448 61 aa-0.64□□□□□ -2.51
NIP1YMR309C MOT1P32333 1867 aa-0.64□□□□□ -2.51
NIP1YMR309C STT4P37297 1900 aa-0.64□□□□□ -2.51
NIP1YMR309C TY3B-IQ7LHG5 1498 aaKnown RBP-0.64□□□□□ -2.51
NIP1YMR309C TY1B-NL2Q99337 1749 aaKnown RBP-0.64□□□□□ -2.51
NIP1YMR309C PAU4P53427 120 aa-0.64□□□□□ -2.51
NIP1YMR309C SPO14P36126 1683 aa-0.64□□□□□ -2.51
NIP1YMR309C YHL005CP38752 130 aa-0.65□□□□□ -2.51
NIP1YMR309C YOR289WQ12012 251 aaPredicted RBP-0.65□□□□□ -2.51
NIP1YMR309C YBR201C-AQ2V2Q3 67 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-LR1P0C2J3 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-FP0CX63 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-GR2P0CX64 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-CP25384 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-DR2Q03494 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-DR3Q07791 1770 aaKnown RBP-0.65□□□□□ -2.51
NIP1YMR309C TY2B-OR1Q12113 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-DR1Q12472 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-BQ12491 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C TY2B-OR2Q12501 1770 aa-0.65□□□□□ -2.51
NIP1YMR309C PAU5P43575 122 aa-0.65□□□□□ -2.51
NIP1YMR309C UBC5P15732 148 aa-0.66□□□□□ -2.51
NIP1YMR309C SDH6Q3E785 79 aa-0.66□□□□□ -2.51
NIP1YMR309C CSF1Q12150 2958 aa-0.66□□□□□ -2.51
NIP1YMR309C UBC4P15731 148 aa-0.67□□□□□ -2.52
NIP1YMR309C RGI1P40043 161 aaPredicted RBP-0.67□□□□□ -2.52
NIP1YMR309C YDR524C-BQ3E6R4 66 aa-0.67□□□□□ -2.52
NIP1YMR309C SPP41P38904 1435 aa-0.67□□□□□ -2.52
NIP1YMR309C ECM29P38737 1868 aa-0.67□□□□□ -2.52
NIP1YMR309C EMC5P40540 141 aa-0.68□□□□□ -2.52
NIP1YMR309C YKL018C-AQ3E7A7 99 aa-0.68□□□□□ -2.52
NIP1YMR309C YOR008C-AQ3E7B9 74 aa-0.68□□□□□ -2.52
NIP1YMR309C YBR032WP38223 100 aa-0.68□□□□□ -2.52
NIP1YMR309C GNA1P43577 159 aaPredicted RBP-0.68□□□□□ -2.52
NIP1YMR309C ATP18P81450 59 aa-0.68□□□□□ -2.52
NIP1YMR309C NHP10Q03435 203 aa-0.68□□□□□ -2.52
NIP1YMR309C YMR090WQ04304 227 aaKnown RBP-0.68□□□□□ -2.52
NIP1YMR309C YMR122W-AQ3E842 84 aa-0.68□□□□□ -2.52
NIP1YMR309C GEA1P47102 1408 aaPredicted RBP-0.69□□□□□ -2.52
NIP1YMR309C YER039C-AP0CD97 72 aa-0.69□□□□□ -2.52
NIP1YMR309C SPC1P46965 94 aa-0.69□□□□□ -2.52
NIP1YMR309C BSC4P53841 131 aa-0.69□□□□□ -2.52
NIP1YMR309C ESP1Q03018 1630 aa-0.7□□□□□ -2.52
NIP1YMR309C YAL065CO13511 128 aa-0.7□□□□□ -2.52
NIP1YMR309C YHR214C-DP0CX93 97 aa-0.7□□□□□ -2.52
NIP1YMR309C YCR085WP25650 117 aa-0.7□□□□□ -2.52
NIP1YMR309C RSM19P53733 91 aaPredicted RBP-0.7□□□□□ -2.52
NIP1YMR309C YMR103CQ04436 120 aa-0.7□□□□□ -2.52
NIP1YMR309C VTH1P40438 1549 aa-0.71□□□□□ -2.52
NIP1YMR309C VTH2P40890 1549 aa-0.71□□□□□ -2.52
NIP1YMR309C YOR343CQ12484 108 aa-0.71□□□□□ -2.52
NIP1YMR309C YPR108W-AQ3E7B3 70 aa-0.71□□□□□ -2.52
NIP1YMR309C Q0017Q9ZZX8 53 aa-0.71□□□□□ -2.52
NIP1YMR309C XRN1P22147 1528 aaKnown RBP-0.71□□□□□ -2.52
NIP1YMR309C QCR6P00127 147 aa-0.72□□□□□ -2.52
NIP1YMR309C TEL1P38110 2787 aa-0.72□□□□□ -2.52
NIP1YMR309C SNU13P39990 126 aaKnown RBP-0.72□□□□□ -2.52
NIP1YMR309C YDR182W-AQ3E796 67 aa-0.72□□□□□ -2.52
NIP1YMR309C YOL097W-AQ3E7Y9 61 aa-0.72□□□□□ -2.52
NIP1YMR309C NHP2P32495 156 aaPredicted RBP-0.72□□□□□ -2.52
NIP1YMR309C YDR029WQ12111 104 aa-0.72□□□□□ -2.52
NIP1YMR309C YDR119W-AQ2V2P9 66 aa-0.72□□□□□ -2.52
NIP1YMR309C YML054C-AQ3E809 52 aa-0.72□□□□□ -2.52
NIP1YMR309C YKL068W-AQ3E826 78 aa-0.72□□□□□ -2.52
NIP1YMR309C RPA190P10964 1664 aaKnown RBP-0.72□□□□□ -2.52
NIP1YMR309C MEC1P38111 2368 aa-0.73□□□□□ -2.53
NIP1YMR309C HMRA1P0CY11 126 aa-0.73□□□□□ -2.53
NIP1YMR309C WIP1Q2V2P8 89 aa-0.73□□□□□ -2.53
NIP1YMR309C YOR072W-BQ3E832 53 aa-0.73□□□□□ -2.53
NIP1YMR309C UTP10P42945 1769 aaKnown RBP-0.73□□□□□ -2.53
NIP1YMR309C FIG2P25653 1609 aa-0.73□□□□□ -2.53
NIP1YMR309C LHP1P33399 275 aaKnown RBP-0.74□□□□□ -2.53
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms